RNA id: TU117708


Basic Information

Item Value
RNA id TU117708
length 1243
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id G87382
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41481787 ~ 41489197 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taatagtaataataataatattatcataAAAAGGAACATCCAAATGCTGGTAACATGGATACATATGGGTCATcctttgtgtatgtgtgtgtgtttgtgtgtaatagagacagtgagagagtgtgtgtgtgtgtgtgtgtgcttggcacagtaataatatatatcaaATTAGCAAATAATCAATTAGCAGGAAGaaaatttgtgtttttcagtaatttatcactgttttattattttggtcGACCCTCTGGATGAATTTCCTACTGGACGCAGCAGTTCTGACCGTTGGCATCCTTGAAGCGCAGCCGCATCTTGGGTTTGTATTTCTCCAGGTACATCAGTTGTTTGGAGTTGAAGGCTCCACGTCTCtttGTCGAATGAACTGAACAGCATCTTCATACATCATCCCACACTCGATTAAGGCTATGGCCACCAAGACAGGAGctCGGCCCAGTCCTGCAACACAGTGCACAGCAATGCAGCAGCCCGGCTCATCcttaaatttacatttcagCAGATTCAACCAGTCGTCCACAACTTGTTCAGGGGGAGAACAACCATCGTCAAACGGCCAATCcAACACTTCTATTCCTTCCTTTTCCACGGGAGCCTTGTCGTAGGTAGCTTCACAGACCCTAACCAGAGTCTGCACTCCGAACGCTTTCAGTTCCTCAGTAAACTTGGACAGCTGTGAGTTGGTGGGGTTGTGGGTGATGAGGAACCTCATACACTCATAGGAGATCTCGACAGGTGCAGGACGATTCATCTCGACACACGAATGGAGGCTTAATATTCTCTGAGCAAAGAAATGAAATCTCCCGAggtgagaatatatatatagagatatatatcGATCAAAATAAGGGTGGAGTTTGGAATTTGGGCAAattttgatgtaaaaaatagaaaagaaaaaggaaatcaCTCACGACTCCtctattaaaaaactaaaaacaaaagaagggGACTAATCCTTCAGAATTTCGGTTTCTAATTAACCCATTCAGGAGAGGAGTGATGGTCAGTTGGCGCTCAACTAAAAGGGGAAGGAGGAAATGGCTCGTCAGCGTCTGATCCGGCTCAGACGGACTCATACAGGTGAACTTTGGGCGAAAGCAGCCTCTTTCCCAAAGCTCAGGATGTAAGACGGTAGTGGTGTAGCGTAATCTTCATGTAGCACGCCGCCTGCTTCTCACTTGTCCACGATGACCAGGTGCTGTGCCTGGCAGAAGTctccactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117700 lncRNA downstream 29082 41446143 ~ 41452705 (-) True G87375
TU117692 lncRNA downstream 52927 41427800 ~ 41428860 (-) True G87371
TU117678 lncRNA downstream 74566 41404016 ~ 41407221 (-) True G87362
TU117639 lncRNA downstream 154291 41321614 ~ 41327496 (-) False G87343
TU117718 lncRNA upstream 57526 41546723 ~ 41547655 (-) True G87391
TU117738 lncRNA upstream 116632 41605829 ~ 41609756 (-) False G87410
TU117739 lncRNA upstream 116632 41605829 ~ 41609756 (-) False G87410
TU117741 lncRNA upstream 116632 41605829 ~ 41609756 (-) True G87410
TU117742 lncRNA upstream 116632 41605829 ~ 41609756 (-) False G87410
XM_022673317.1 mRNA downstream 10866 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA downstream 10866 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA downstream 10872 41462336 ~ 41470915 (-) False LOC103044494
XM_022673320.1 mRNA downstream 122325 41348855 ~ 41359462 (-) True rtraf
XM_007241976.3 mRNA downstream 229359 41233845 ~ 41252428 (-) True LOC103035710
XM_007239464.3 mRNA upstream 267535 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 283870 41773067 ~ 41804870 (-) True LOC103040189
XM_022673323.1 mRNA upstream 1019925 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 1025073 42514270 ~ 42655749 (-) False LOC103028306
TU117264 other downstream 711316 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 945453 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3412735 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4380206 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 306338 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000311_01706582_01708248.mRNA True 1014 mRNA 0.41 5 CI01000311 1706075 ~ 1708248 (-)