RNA id: TU117828


Basic Information

Item Value
RNA id TU117828
length 388
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G87469
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41931767 ~ 41967600 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatggtgtgtaaatgatagtaatcaagaaaatgtattattataagtggtatatttcattatttgttttattacagagtctgtggctcATATATTTTTCATTCTGGCCCCCGAGAAGAAAAGtatggacacccctggtctaaacCAATCAAAGTACAATGTGCAGCCCCGGtttgtcccagctggcccacaTTGGACCAGCATAAAGACGTTGCCTCAGCCTTTACTCGAGAGATGCGCTGATGGTAAAAGGAAAGCTGAGGCAACACAAACCTAAGAAACACTAAAGTTAAGCAACTAGAGCCACACTGGGAAGTTAGTATGTTCCCTTAAGTTGGTTTTGGGTGTTgaattttccatttttactaataaaggtacattttaagttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117819 lncRNA downstream 29841 41850381 ~ 41901926 (-) True G87461
TU117809 lncRNA downstream 86965 41844258 ~ 41844802 (-) True G87453
TU117792 lncRNA downstream 92444 41752925 ~ 41839323 (-) False G87442
TU117790 lncRNA downstream 176578 41752925 ~ 41755189 (-) True G87442
TU117787 lncRNA downstream 179815 41745335 ~ 41751952 (-) False LOC111193270
TU117839 lncRNA upstream 93626 42061226 ~ 42061455 (-) True G87479
TU117841 lncRNA upstream 113867 42081467 ~ 42081745 (-) True G87481
TU117878 lncRNA upstream 201952 42169552 ~ 42191031 (-) True G87516
TU117914 lncRNA upstream 473530 42441130 ~ 42450193 (-) True G87551
TU117920 lncRNA upstream 513916 42481516 ~ 42481741 (-) True G87557
XM_022672519.1 mRNA downstream 126897 41773067 ~ 41804870 (-) True LOC103040189
XM_007239464.3 mRNA downstream 172680 41756732 ~ 41759087 (-) True gpr135
XM_022673317.1 mRNA downstream 460846 41462336 ~ 41470921 (-) True LOC103044494
XM_022673323.1 mRNA upstream 541522 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 546670 42514270 ~ 42655749 (-) False LOC103028306
TU117804 other downstream 126879 41795535 ~ 41804888 (-) False LOC103040189
TU117264 other downstream 1161296 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1395433 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3862715 37982874 ~ 38069052 (-) True G86432
XR_002650394.1 other downstream 4843836 36591633 ~ 37087931 (-) False nrxn3

Expression Profile