RNA id: TU117790


Basic Information

Item Value
RNA id TU117790
length 1678
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G87442
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41752925 ~ 41839323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaaatcagagaaactgattcagaaactgaagtgctctcttcatttttttcagagctgaatgTAAGAACTGGCCTGttaattaacttaattagtTGAATCAGGTTGTTTTACAGCAGAAAATTGCTGGAAATGTGCACAAAATACAGTGTTCTGAGGTTCTCCAGTACTAGGAATGGGAAATCAGATTTACACAGCAGTGCAGTCCATTGGAAACCTGAAGATAGTTCatgtttttggtctttttttagCTAACAGGTATAACAGTTTATAATTGCTGGGTTTAGGTAATGGTAATTGGAAAAGAGAACAAAAATGGAAACACTGGCCCAGGTCTTGTCTTAAAGAGGAATTCAACTGATTTTACAATAGTTCAAATGTACTGAATTTGTTTATACTTTAGGAAATTGGAAAAATCAGTGGATTTCCCCTTGGTCTTTACTGTATGTTATCTGTATGTTATTTGGTAAGATTTGGTAAGTgccaaaatgcatttaaacactgtgggggaaaaatgaaaagaaaattaagAGTGAAGTTTTTGCCTGTGCCATTTTATTAATCTTAAAGTCTATCTGAGAACTGCTTGGTCATCAGAAGCGAATATTACTGCGTTGCACTAAGAAACAGAGgaattgaaaaaaattaatgtattaactgtttgtttgtctccatattaaacaaagatatatttatttatttgtcatttatgCCCCATTCCATTAGAGAAGTACTACAGTGTCCAAATGCCTCAAATACCTAGTTGTTGTGGAGACAACGTACAATGTAACATAATTGCAAagaggtcatgctgcttctccatcagcagccggagtctgagagagagagagagagagagagagagagagagagagagagagagtacagtaggtcatgctgcttctccatcagcagccggagtctgagagagagagagagggagagagagagagagtacagtaggtcatgctgtttctccatcagcagccggagtctgagagagagagagagagattacagtagattatgctgtttctccatcagcagctggagtctgagagagagagtacagtaggtcttaaggtaaaaaaaattaaaagtcagAGTATTCCTTTAATTCCAAAACAGTTTGAACAGTATATGGATTCACTGATATATGATATGCATGTGCATTATTCATATGATGCATATGATACAAtgaaacaaatatatactaCTGGTACAATGACCGTacattgatcatttttattgacGATAAATACGATATTTTAAACCAATTTAAACCTAAATCACATGTAGCAGCATTGACCAAGTTACTCAAGTTATTTTGTCcagtttttttaatctaaaaccttgtttttgtctgaaTACTTTTCGacgacctgtgtgtgtgtgtgtgtgtaaatacacTGTGGATAAACAGATCAGACTGAGCCCTGCTGATAATCAGACAGAATAATCTAAAAGCCAATGTATTATAACTCGAGTTGGAGGTATCCAGTGTGTTTCAGAGAGAAgctgtatccagtatgaattcctGAAGGATTGAGCCATATGCTGTGTGCCTGTTGAATCTAATACACATTGCTTTACCCTGCAGCACTGCTGAACCATGTTATAAACTGCAGAAACACCGGCACTGATACTGATATTCATAATTAAACGATTTTTATAAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650403.1 lncRNA downstream 941 41725320 ~ 41751984 (-) True LOC111193270
TU117787 lncRNA downstream 973 41745335 ~ 41751952 (-) False LOC111193270
TU117780 lncRNA downstream 7652 41725342 ~ 41745273 (-) False LOC111193270
TU117772 lncRNA downstream 13598 41715756 ~ 41739327 (-) True G87432
TU117749 lncRNA downstream 52050 41621883 ~ 41700875 (-) False G87414
TU117809 lncRNA upstream 89069 41844258 ~ 41844802 (-) True G87453
TU117819 lncRNA upstream 95192 41850381 ~ 41901926 (-) True G87461
TU117828 lncRNA upstream 176578 41931767 ~ 41967600 (-) True G87469
TU117839 lncRNA upstream 306037 42061226 ~ 42061455 (-) True G87479
TU117841 lncRNA upstream 326278 42081467 ~ 42081745 (-) True G87481
XM_022673317.1 mRNA downstream 282004 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA downstream 282004 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA downstream 282010 41462336 ~ 41470915 (-) False LOC103044494
XM_022673320.1 mRNA downstream 393463 41348855 ~ 41359462 (-) True rtraf
XM_007241976.3 mRNA downstream 500497 41233845 ~ 41252428 (-) True LOC103035710
XM_007239464.3 mRNA upstream 1543 41756732 ~ 41759087 (-) True gpr135
XM_022672519.1 mRNA upstream 17878 41773067 ~ 41804870 (-) True LOC103040189
XM_022673323.1 mRNA upstream 753933 42509122 ~ 42655749 (-) True LOC103028306
XM_022673322.1 mRNA upstream 759081 42514270 ~ 42655749 (-) False LOC103028306
TU117264 other downstream 982454 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 1216591 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3683873 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4651344 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 40346 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile