LOC103039520


Basic Information

Item Value
gene id LOC103039520
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31565609 ~ 31604422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673174.1
TTTGACGTGGAGGGATGTCCAGCACCTGATCACAAGGACAGCAAAGATACCAGACCCTAACCAGCCAGGGTGGATTGTCAATGGGGGCAGGATACCACGTCCATGACAGGTACGGCTTTGGTCTGTTAGATGCTGCACTGATGGTGCAGAAGGCGGTGAATTTTCACTCAGTTGCAGATCAGAGGAAGTGTGAGCAGACTGTGACCCTTCAGCCTGTTCAAATTCTTCCAGCTGGTGAAGAGGTCAGTGTGGCAGTTCAGTCGGAGGCCTGCAGGGGACAGCATAATGAGATAAACACACTGGAGCATGTGCAGGTGACGGTGAACATCAGCAGTGTGTGCCGTGGTGATCTGAGTGTGAAGCTGGTGTCTCCAGCCGAAACACACTCGGTACTGCTGGGCACGCGGAGCAATGACCGTTCGGCAGAGGGTCTGAAGAACTGGACACTGATGACCATACAAAACTGGGGTGAAAATCCACAAGGAACATGGAAACTAACTgtgaagGATCATAAAGGGACGGCTGTTGGCTGTAGCCGAAGTCACACTGAGCAGGAAGCTGGAGCTGTACTGAACATTACCCTCACACTCTACGGCACCTACAACCCCAACACCACCAACCACGGTTCTCCTCTGAGTGCATTCGTCTCTCTGGGCGAGCTCCATACTCTTCCTGTTGAGCGAGTGAGTGTGCGGAACCGTTTCCCACCACAGGACCTCATCCACCGGGCCTTCAGACTGGAGCAGGGCAGCAAGGTCACACCTGAggacataccacacacacaaaaacacagcaagATTCTTCAGAAACCTGAGGTGAAAAATTTCTCAGCTCCCGAGTTCAGTTCGAGAGACATGGATGACACTGATGGAGAGGGTCTAAGATCCCACCTGATGAAGCTGTGGAACACCCTGAGAAATAAAGTGCAGGTGGATCAGGCTCAGTACAGCACTCTCAGACACTCTAATACACAACAGATGGCAGACATGAAACCCTCTAAATCCCTTCAGTCTAATGATGTGGCTGATGTTTGGGCAGCTGAGGATGGCACCGTCGTTGAACAGCATCTCTCAAGACGTGTCCGAAACATTAAAGATCGCACACCACTTcgagaacaagagagaaaaagaacatgAAGGGACAACATCAGTGACTCTTACTGAGCTAAGGAGTGGAGGGTACTGAAGGAAAAGTGGAATTTGTAGTGGAATGTGGAAATATGCAAATGTTggaatgtactgtactgtaatctactgtataaTGTAGCCGCTTTCCCCTCAAACTGTTTcagtaaatgtataataatagcAGAGATCTCACTCCTCCTGTGTGGTCTATAATTCTCCCATATGTTGATAGCGGCTCCATGATGCTAACAAATCATCTACAACATCCGATAAATCAGGAAATTGTAATATTAAGCCCACTTGCACACAAAGAGCCTATCAGTGGGCAATATGGGTGGGATTTCCATCCCGATTGGTCTGATTATGTGTTCATTACACCTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673174.1 True 1511 mRNA 0.49 8 31565609 31604422

Neighbor

gene id symbol gene type direction distance location
pou3f2 LOC108411522,LOC107700690,LOC107711728,LOC107704941,LOC102780520,LOC101475787 coding downstream 9522 31554599 ~ 31556087 (-)
mbp LOC108441789 coding downstream 294271 31243479 ~ 31271338 (-)
zadh2 zadh2 coding downstream 537054 31024449 ~ 31028555 (-)
LOC103044643 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 coding downstream 643944 30912881 ~ 30921665 (-)
cdyl NA coding downstream 658058 30895965 ~ 30907551 (-)
LOC111193154 NA coding upstream 48720 31653142 ~ 31700104 (-)
klhl32 klhl32 coding upstream 160445 31764867 ~ 31788132 (-)
zufsp NA coding upstream 219155 31823577 ~ 31835459 (-)
trnar-ucg_5 NA coding upstream 248881 31853303 ~ 31853375 (-)
gprc6a NA coding upstream 279680 31884102 ~ 31896215 (-)
G85141 NA non-coding downstream 19473 31543486 ~ 31546136 (-)
G85142 NA non-coding downstream 22642 31540000 ~ 31542967 (-)
G85135 NA non-coding downstream 43861 31521280 ~ 31521748 (-)
G85125 NA non-coding downstream 58762 31503660 ~ 31506847 (-)
G85124 coq3 non-coding downstream 86161 31476015 ~ 31479448 (-)
G85218 mms22l non-coding upstream 154272 31758694 ~ 31760151 (-)
G85220 NA non-coding upstream 188884 31793306 ~ 31797569 (-)
G85227 NA non-coding upstream 209240 31813662 ~ 31897212 (-)
G85233 NA non-coding upstream 259941 31864363 ~ 31866825 (-)
G85231 NA non-coding upstream 308701 31913123 ~ 31913723 (-)
mrpl34 mrpl34 other downstream 742911 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 981788 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 1209889 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 1490672 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 1635034 29858977 ~ 29930575 (-)
LOC111193156 NA other upstream 845209 32449631 ~ 32491820 (-)
G85501 NA other upstream 1507052 33111474 ~ 33111734 (-)
G85550 NA other upstream 1905258 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 2229590 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 2350773 33955195 ~ 34012562 (-)

Expression


Co-expression Network