G85125


Basic Information

Item Value
gene id G85125
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31503660 ~ 31506847 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114637
CAGCTATTGTAATTGGTTCAGGATTGCACACTCAGAGGAAATGACTGTAAGTACATGATATCTCACAGATTACTCAGTCCATCAGGAGTGTCTGTCTTACACACAGGAGATTACATCACACACAGCACGCTCATCCATCTGCAGTCCAGGCTAATATGGCTTCAGTAACAAGGCTGAGCAGAAAGTCCAGATACATCCTCTGGAGACCGGTTCATATGCAGACTGGGGAGACCGAAATCACAGGCTGTGTCCCAATCCTACAAACAAGCTTTTCTAATATTCCTTCATAATTCAGTGTTTGAGATAAGGGCATTCAGACCgggggtttggtgtgaaattgcAGTTCTTCAATCTTTTttagtcagttttttttacattggtgGTGAATGGAAACACATGTTGCTGTGGttacaaaacaaatataaccatttattttttaatatactgtctCAAAACCCACTAGTAAACTGTACATTGTTTTATACCAGTTTCATATGGAATGTTGATGGTGGTAAAACAGGATTTACTAAGATTTCTAGGGGAACTATTTTCTTGCTCAGCACTCACAGGTATCCCTCCAcccttttaatgttttgtaattttaaatacatgttttagaCGCAAAATCTTATGTAAACTTTTGGTAAATTAGTGTCTCTGACATCATGCAGTATATTATTATCaatttggtgtaataacttcTTGTTATATCCGAGGTTCAGACGTATAAATCCATTCACCACAACTGTGATAAAATGAGATCCGGCAAGTTTTACACCAAACCCAATCTAAATTACCTTGTTCAGGTTGTGTTTAGACTGCTAGTCCAGATCTGAATCTAGACagtatccagattgattttttgacccaaatcattGCAAATCAGATCTAAACCacattttaaagtagtttaaaaTGTGAGTACAGTCTGATTTGTAAAGATGCGTCTCAAGTCTGGACGTTCTGAACACTTAAATAATATTGTGATGTCCAGACATGCAAATCCCACTGTACACGGTAATCTCAACAGATCTGATCTGAGGAACTGAATTAGAACCTGATttacctgcagtctgaacacaccttttttttacacctcAAACATGTAACGCATAATGCAGAGCATCATGATCTTTTAACTTCCATACCGCTGTATTAAACCCACATTAAAGCTCCTCAGTTGATCATACTCATATCAGTCACGCCAGTTCGTTTAAAATCTATCAATCCGTTCAATTAATATGTGCAAAATTAGTCCATACTGTAcacaaatgataaataaatacatatatacatacgtaaataaatcaatatgtaaataaaaaataaatacatacataaatatagaaataaaaataatttgtacTGGCTTTGATTTCAAGTAAGAGGTATAAATTGATTATAAAGCTGCTTTTTAAACCACCTAAGGCAAACTCATCATCATGATtagcatgtgcacacacacaaacacaaacacatatgtaggcctgtcacgataactatatttttgtttgatatCTTGTCAGTTGCAATAATTGTGatgaacaatattattgtcattttaagatcattttatgccactgttgtgatgacaataatatcataataatgcaattacagcCTATTCAAGGGCaataaacttttattataattaagaaTATTAATAGAGAAGcagcaaatgaaaaaaagaaaagaaagaattattattaaatttctgttttatataataatagtataataacataatttataCTGAACTTGGGAGTGGGAGGGCTGAATGATCGAGGGATCCAGGGATTGGCTGGCCAGGGCATATTAATGCTACATTAGCGATGTGGGACGAGGCCGGTAGCCGGTGTGCTAATGTCGTGGTAGTGATGCTGAAAGAGGCCGGCAGTGCTGTGGGATGATAAGACCACTTGCCGGACAAAGCCATTAGCCGGTGTGCTAATTTTAATTCTGTGAtagtcacttgtcattccctttaagagtcaggtgtgctcggactttggcacgttgatatcttaacagcatgGCACTTCAGTATGTCTCAATGAGaaattgttgatgtaaaagcaaGTTTGTGTACTGCAGTGcgtttaatttgtgtgtgtaatttgtgtgaGCTGAGAGCGTGCAACATGCACAGCTGTTATGCATGTTTAAGATAAGATTAcgcggctgactgttgtcagggttttaatcagttagtGGTGCATCTGTATTTcccaccaccaagatagaaCCATGCCAAATATTTACCTGaccacacctcacttccagagcACATCGCaaatcagcgtagatatattcagaaactctgacgctattttaacagtgggGCCACAAGGCGTGAAATTAAATTGTTTACGccgtgtaagatagcaacgagcatcgcaaccacctggaaatggtttcctacaccttcaaatgaCTCTTGGAAACTAGAGAAACTGGTACAGGGGTCAGGTCTGGCTGATCTACATGGCAGCACCTTCAGCTACAACAATGGGCAATATAGAGATCAGTTAAAATGACTGATTCTCAAGTGAGgttcatatattgtacaataatttaataagtagcgtatttattgtgacaggcctacccaCACAGAATTGTAAAACAGAATTGTTAACAGCAGAGTGTGTCTCCTCACTGTGAACATCTCTGCACACTCGGAGGAACTTAATCACTAATTCAGCATGTGGTTAATGAGCTGGATCTGGCGTTATTTTACACTAATGGAAACACGACTCATGCCCAGGACTGTGACTGAGGATGCCTGGGCTTCAGTTAAGGCCAtagttctgctgctgctgctgaggacAGAAATACAACATGTGGCCTGCAATATTAAGCCCAGCTGAAATCACGAGAATGCTCACAGTGCCCTCTGCTGGTCACAAACACGAACTGCAGCATCCAAAGTGGATAAATACCTACAGTACAAGCACTAAACTGCACCCAAACCCACACATCACCATGCACTGTTAGTGATGGTGTACTATAGTGATATACTGCTCTGTATGTTGATGTGCAGTTTTGGACGCAGCCTCTGTTAATAAGAAGCCTGGTCGCTTAGTATTAGGTCCATTATACTAAACCTGCTACCTGCTAAATGACATTAGTACAAGGCCTGAGGGATCCAAACACAGCACTGTGTGTgcatgaatatgtgtgtgtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114637 True 3188 lncRNA 0.39 1 31503660 31506847

Neighbor

gene id symbol gene type direction distance location
mbp LOC108441789 coding downstream 232322 31243479 ~ 31271338 (-)
zadh2 zadh2 coding downstream 475105 31024449 ~ 31028555 (-)
LOC103044643 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 coding downstream 581995 30912881 ~ 30921665 (-)
cdyl NA coding downstream 596109 30895965 ~ 30907551 (-)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107680227,LOC107722554,LOC107718171,LOC107589905 coding downstream 622633 30877314 ~ 30881027 (-)
pou3f2 LOC108411522,LOC107700690,LOC107711728,LOC107704941,LOC102780520,LOC101475787 coding upstream 47752 31554599 ~ 31556087 (-)
LOC103039520 NA coding upstream 58762 31565609 ~ 31604422 (-)
LOC111193154 NA coding upstream 146295 31653142 ~ 31700104 (-)
klhl32 klhl32 coding upstream 258020 31764867 ~ 31788132 (-)
zufsp NA coding upstream 316730 31823577 ~ 31835459 (-)
G85124 coq3 non-coding downstream 24212 31476015 ~ 31479448 (-)
G85121 NA non-coding downstream 34117 31467739 ~ 31469543 (-)
G85122 pnisr,LOC107716852 non-coding downstream 38952 31459541 ~ 31464708 (-)
G85110 NA non-coding downstream 125651 31372562 ~ 31378009 (-)
G85099 NA non-coding downstream 175077 31327733 ~ 31328583 (-)
G85135 NA non-coding upstream 14433 31521280 ~ 31521748 (-)
G85142 NA non-coding upstream 33153 31540000 ~ 31542967 (-)
G85141 NA non-coding upstream 36639 31543486 ~ 31546136 (-)
G85218 mms22l non-coding upstream 251847 31758694 ~ 31760151 (-)
G85220 NA non-coding upstream 286459 31793306 ~ 31797569 (-)
mrpl34 mrpl34 other downstream 680962 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 919839 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 1147940 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 1428723 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 1573085 29858977 ~ 29930575 (-)
LOC111193156 NA other upstream 942784 32449631 ~ 32491820 (-)
G85501 NA other upstream 1604627 33111474 ~ 33111734 (-)
G85550 NA other upstream 2002833 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 2327165 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 2448348 33955195 ~ 34012562 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G273774 NA non-coding CI01000069 null 1706695 ~ 1728531 (+)
mexican tetra (Astyanax mexicanus) G228564 NA non-coding NW_019170681.1 APWO02000279.1 33996 ~ 35826 (-)