G85122 (pnisr,LOC107716852)


Basic Information

Item Value
gene id G85122
gene name pnisr,LOC107716852
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31459541 ~ 31464708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114634
CGTAAGGGAGCACTTACCGAGGCCGGTGAGAGAAGCCAGTGCACTGGACTGTGCCAGCTGTTTTGCAGGAGCTTTGGTGGCTTTGCGGTGAGTTTCTTTGGCCACCTGCTGGATCTCTTCATTCGTCACCTCCAGGAGGACTTCGGTCAGGAGTGTTTTGGTCAGGAGCATCAGCTGaaactctctctcctcttcagtCATCTCCGGTTCACTCTGCTCCTCACGGGCAGGAGAGgagtttctgctgctgctgttctccaGCCGTCTCACCAGCACATTCTCCTCCTGAGCCTCAACTTCACCATcaccatcctcctcctcctcctcatcgtCGTCATCACTGTCAAATTTGCTCTTGCGTGGCACCCGAGGGccctctccctcttcctctacCATATCATTATCCTTGTCCTCGCTCGCCATTTCTGCTCGCTGCTTCTCCAGCCTCTCCTTCTCcagcttcttctgcttctctcGGTCCATCTTCTCCAGGCCTTCTCGAATCCACGCTGGCAGAGTTCTCCTTTTAACAGCATCAAGAGTTGGTGCAGCCTCTGGTGCTTTAATTCCCAGTTGGTTGGGTGATCTGGGTCGCTCTGGCCTGAAACCTGAAACCGGAAGTCTGTCTCGTCTGTTTTGGGGTCCGTCAGGCCCCCAGTATGGAGGATGGAACCCAGCGCCTGGTGGGCCGAATGTTCCTCCTGTTGCTGCTGCCGCTCcggctgctgctccatgctggaCACAAAAAGAGATGCTTATTTTCTAAAGAACTTTACAATAAAAATC

Function

symbol description
pnisr Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein).

NR:

description
PREDICTED: arginine/serine-rich protein PNISR

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114634 True 786 lncRNA 0.54 5 31459541 31464708

Neighbor

gene id symbol gene type direction distance location
mbp LOC108441789 coding downstream 188203 31243479 ~ 31271338 (-)
zadh2 zadh2 coding downstream 430986 31024449 ~ 31028555 (-)
LOC103044643 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 coding downstream 537876 30912881 ~ 30921665 (-)
cdyl NA coding downstream 551990 30895965 ~ 30907551 (-)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107680227,LOC107722554,LOC107718171,LOC107589905 coding downstream 578514 30877314 ~ 30881027 (-)
pou3f2 LOC108411522,LOC107700690,LOC107711728,LOC107704941,LOC102780520,LOC101475787 coding upstream 89891 31554599 ~ 31556087 (-)
LOC103039520 NA coding upstream 100901 31565609 ~ 31604422 (-)
LOC111193154 NA coding upstream 188434 31653142 ~ 31700104 (-)
klhl32 klhl32 coding upstream 300159 31764867 ~ 31788132 (-)
zufsp NA coding upstream 358869 31823577 ~ 31835459 (-)
G85110 NA non-coding downstream 81532 31372562 ~ 31378009 (-)
G85099 NA non-coding downstream 130958 31327733 ~ 31328583 (-)
G85063 NA non-coding downstream 196725 31261466 ~ 31262816 (-)
G85064 NA non-coding downstream 219191 31147282 ~ 31240350 (-)
G85005 NA non-coding downstream 369435 31089868 ~ 31090106 (-)
G85121 NA non-coding upstream 3031 31467739 ~ 31469543 (-)
G85124 coq3 non-coding upstream 11307 31476015 ~ 31479448 (-)
G85125 NA non-coding upstream 38952 31503660 ~ 31506847 (-)
G85135 NA non-coding upstream 56572 31521280 ~ 31521748 (-)
G85142 NA non-coding upstream 75292 31540000 ~ 31542967 (-)
mrpl34 mrpl34 other downstream 636843 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 875720 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 1103821 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 1384604 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 1528966 29858977 ~ 29930575 (-)
LOC111193156 NA other upstream 984923 32449631 ~ 32491820 (-)
G85501 NA other upstream 1646766 33111474 ~ 33111734 (-)
G85550 NA other upstream 2044972 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 2369304 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 2490487 33955195 ~ 34012562 (-)

Expression


Co-expression Network