G85064


Basic Information

Item Value
gene id G85064
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31147282 ~ 31240350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114569
tttctcaacATTACAAAATACATGTGCGCCACAAAGCGAACAGCTTCAGTTCTGTACACAGGAAAAGCCCTCCATCCATGAAACAggtcataattaataataatgaaaccCAGTGCGACCTGCACAACTTATGGACTAGACTGTTCTCCATCCAGAGACTAATTACATtagtaaaaaacactttgtacaATCAAAACTTTCTTAAATTACATCCACCATTTTAAAGAAACTCCTTACAGAAGTTTTCAGTTGTGCACTTTTTTGAGTTGGGTTGGTCCAGCGTCTCGAGTAAACAGTGCTGAGTGATACTGAGGGTCACTCTCAGACGGCTGGGATGCGCCGCACGACTGCGAGCCCGAGATTGAAAAGGCTGGAGAAGACAGTAAGggtgcagaaacacacacacacacacacaGAGCGGATTACACAgagaaactcatttaaaaatcCCTCTCACGTCCAAGTGGCAAaacacattgatttttttttttttttacctcccgGGCCGAGGTGAGCCGGTGTCAGCCAGCTAATTTAACAAGAGGACTGCTGTCATCATCCTGCAAGCGCTTGTGCTGCTTGTGGGAAACTCACAAACAAAAGGTGGGAATTGGGAGACCTGTTAGCGACGTGTCGGGCTTTAACGACTTCTCTGCGGGGGAAGCTCAGCTCACAGAGACTGAGGAAATaaacagtagcagcagcagcagcacaaacgTCCCTCAGCAACTCGGAGCTCTCAGAGACTGGAGAAgtcagggagtgtgtgtgtgtgcgtgtgtgtgtgtgtgttggtggggaTTAGTGAAGAATACTGGAGTCGACAGGGGATGAGGGTATTACGAGTGTTTATAGTTTGGTGGATTAACCTGCTGGATTTCAGGGAGTCTGTGGGGTTTAGAGGAGGAGTGTGTGAAGGTTTAGAAGACAAATCCATAACGGTTGAAGGATGAACCTGTAAGGATTAGGGCACAGATCTGCAGGGTTCAGGGGATGAAGTTTTTTGGCAGGCTCTAGAGTGTGTAAACTTTAAAGaataagagaagaagaaagtgtGGAGTTTAGAGCAGAATCTGATTGATCTGTATCTGGAGAGCtcctataatatataatatacaatatatggttATGCACACACTGCCAGTCCAAATCTGATATTTGACATGTCTAAACTGTATACAGATCTGAATCCAGATATGTGACAATTCAAAGAACATCCAATAATGACATGAAATCAGATTTTGGCAtagctacagctctggaaaaaaaaatatttgattttaccaaattgaaaacttctg
>TU114571
tttctcaacATTACAAAATACATGTGCGCCACAAAGCGAACAGCTTCAGTTCTGTACACAGGAAAAGCCCTCCATCCATGAAACAggtcataattaataataatgaaaccCAGTGCGACCTGCACAACTTATGGACTAGACTGTTCTCCATCCAGAGACTAATTACATtagtaaaaaacactttgtacaATCAAAACTTTCTTAAATTACATCCACCATTTTAAAGAAACTCCTTACAGAAGTTTTCAGTTGTGCACTTTTTTGAGTTGGGTTGGTCCAGCGTCTCGAGTAAACAGTGCTGAGTGATACTGAGGGTCACTCTCAGACGGCTGGGATGCGCCGCACGACTGCGAGCCCGAGATTGAAAAGGCTGGAGAAGACAGTAAGggtgcagaaacacacacacacacacacacaGCGGATTACACAgagaaactcatttaaaaatcCCTCTCACGTCCAAGTGGCAAaacacattgatttttttttttttttacctcccgGGCCGAGGTGAGCCGGTGTCAGCCAGCTAATTTAACAAGAGGACTGCTGTCATCATCCTGCAAGCGCTTGTGCTGCTTGTGGGAAACTCACAAACAAAAGGTGGGAATTGGGAGACCTGTTAGCGACGTGTCGGGCTTTAACGACTTCTCTGCGGGGGAAGCTCAGCTCACAGAGACTGAGGAAATaaacagtagcagcagcagcagcacaaacgTCCCTCAGCAACTCGGAGCTCTCAGAGACTGGAGAAgtcagggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagcagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114569 True 1301 lncRNA 0.43 2 31239023 31240350
TU114571 False 840 lncRNA 0.46 3 31147282 31240350

Neighbor

gene id symbol gene type direction distance location
zadh2 zadh2 coding downstream 118727 31024449 ~ 31028555 (-)
LOC103044643 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 coding downstream 225617 30912881 ~ 30921665 (-)
cdyl NA coding downstream 239731 30895965 ~ 30907551 (-)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107680227,LOC107722554,LOC107718171,LOC107589905 coding downstream 266255 30877314 ~ 30881027 (-)
LOC103042711 LOC102205474,LOC102296319,LOC101478464,LOC103372132 coding downstream 274751 30863479 ~ 30872531 (-)
mbp LOC108441789 coding upstream 3129 31243479 ~ 31271338 (-)
pou3f2 LOC108411522,LOC107700690,LOC107711728,LOC107704941,LOC102780520,LOC101475787 coding upstream 314249 31554599 ~ 31556087 (-)
LOC103039520 NA coding upstream 325259 31565609 ~ 31604422 (-)
LOC111193154 NA coding upstream 412792 31653142 ~ 31700104 (-)
klhl32 klhl32 coding upstream 524517 31764867 ~ 31788132 (-)
G85005 NA non-coding downstream 57176 31089868 ~ 31090106 (-)
G84987 NA non-coding downstream 128267 31018722 ~ 31019015 (-)
G84959 NA non-coding downstream 253784 30893284 ~ 30893498 (-)
LOC111193244 NA non-coding downstream 423107 30719736 ~ 30724175 (-)
G84932 NA non-coding downstream 430702 30713644 ~ 30716580 (-)
G85063 NA non-coding upstream 21116 31261466 ~ 31262816 (-)
G85099 NA non-coding upstream 87383 31327733 ~ 31328583 (-)
G85110 NA non-coding upstream 132212 31372562 ~ 31378009 (-)
G85122 pnisr,LOC107716852 non-coding upstream 219191 31459541 ~ 31464708 (-)
G85121 NA non-coding upstream 227389 31467739 ~ 31469543 (-)
mrpl34 mrpl34 other downstream 324584 30820119 ~ 30822698 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other downstream 563461 30579943 ~ 30583821 (-)
map6d1 LOC108428296 other downstream 791562 30334038 ~ 30355720 (-)
G84663 LOC100707891,LOC103372284 other downstream 1072345 30008627 ~ 30074937 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other downstream 1216707 29858977 ~ 29930575 (-)
LOC111193156 NA other upstream 1209281 32449631 ~ 32491820 (-)
G85501 NA other upstream 1871124 33111474 ~ 33111734 (-)
G85550 NA other upstream 2269330 33509680 ~ 33518671 (-)
G85618 slc4a1ap other upstream 2593662 33834012 ~ 33839629 (-)
rbks rbks,LOC107553733,LOC107656748 other upstream 2714845 33955195 ~ 34012562 (-)

Expression


Co-expression Network