scaf8 (scaf8,LOC107749595,LOC107675315)


Basic Information

Item Value
gene id scaf8
gene name scaf8,LOC107749595,LOC107675315
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35557208 ~ 35600287 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673213.1
CCTCCCACTGTTACCCCCACCACTACCACGTCCACCCTCCACCACCGACCACAGGACATGCGCAGCTCAGACCGGGCTGTGCAGGCGACCCACACCTCACCAAAATCCACATTCAGCTGGAAGTGAGGAGCCGAACCCGCCGCTGCTGACATGGAGGCAGTTAAAGCGTTTAATGGCGAGCTGTACTCTCTCAATGAATACAAGCCTCCAATCTCCAAAGCGAAGATGACCCAGATTACCAAGTCTGCAATTAAAGCTATAAAGTTCTACAAACACGTCGTCCAGAGTGTGGAAAAATTCATTCAGAAGtgcaAGCCTGAGTACAAGGTCCCTGGTCTGTACGTCATCGACTCTATTGTCCGGCAGTCCCGGCACCAGTTTGGCCAGGAGAAGGATGTGTTTGCTCCCCGCTTCAGTAAAAACATCATCAACACCTTTCAGAACCTGTATCGGTGCCCTTCTGATGACAAGagcAAGATTGTCCGGGTCCTCAATCTGTGGCAGAAAAACAGTGTGTTCAAAAGTGACATTATCCAGCCCCTACTGGACATGGCAGCAGGACTACCACCCCCAAGTGTCACACCAGTAACTGCCAGCAGTGCTGTCCCTGTCAacaatgccactcctgGCACTCCGGCAACTCCTGCCACTCCAGCCAACATAGTACCGAGTTTACCAGACTGGGCTTCTCAGATCTCTAACTCAGACACGATGACGACTGTAGCTCAGATCCTACAGAGCCCTCAGGGGCAACAGTTGCAGCAGTTGGTGCAAAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCGTCGCTGCTGCAGGCGTTGGACGCAGGCCTAGTGGTCCAGTTACAGGCTCTGACCGCCCAGCTCACAGCCGCAGCTGCAGCAAACACCCTCAACCCCCTGGAGCAGAGAGTTTCCTCCTTCAACAAGAAACTTCTGGGTCAGTTTGATTTTGGTGGTGAATCAGAAGCCAATGAGGATTCGAAAAAGGACACAGGATCATCTCAGCTgCCCATGGTTTCAGACTCAATCAACAGCTCTATTTTCCATCAGTTGGCtgagcagctccagcagcagaaCCTTGAACAGTTTCAGAAGCAAATAATGGAGCATCAACAGCATCAGCAGAAGTCCATGGCAATGGAAAACCAGGAGAATATCTTTGGTTCTGAGAATTCTGCCCTTCCATCACAGGGCACAGGCCAAACACAGCTCCAAGAACAGGAAACTAAACTGGACGACTCTATTGACAACCAGCAACAGGACATGGATCTTGATGAGGGACAAGATACTGTGGACGAGGAGATCTTTGAGTCAGAAGAGAAGAAAACCAGTGGAACTCGTTCAAGAACACGCTCTAGGTCTCGCTCCAGATCTCCTAAAAGGAGGAGGTCCAGGTCACGCTCAGGCTCTCGGAAGCGCAAACACAGGAAACGCTCACGATCACGGTCGAGAGACAGGAAGAGGAAATCTTCTCGCTCCTACTCCAGTGAACGACGAGctcgagagagagaaaaagagcggCAGAAGAAAGGCCTTCCTCCTATTCGCTCCAAATTTCTCAGTGTTTGCAGCACTACGTTGTGGGTGGGCCAAGTGGACAAGAAGGCCACCCAGCAGGACCTCACTAACCTTTTTGAAGAGTTTGGCCAGATTGAATCCATTAATATGATTCCTCCCAGGGGCTGTGCGTATATCTGCATGGTTCACAGACAAGATGCTTACCGCGCCCGACAGAAATTAAGCACTGGCTCTTTTAAAATCGGTTCTAAGGTTATTAAGATTGCCTGGGCTCTCAATAAGGGTGTAAAGCAAGAGTACAAGCAGTTCTGGGATGTGGATCTTGGTGTGACCTATATCCCTTGGGAGAAGGTTAAATTGGATGACCTGGATGACTTTGCTGAAGGAGGGATGATTGACCAGGAAACAGTCAACAATGAATGGGAAGCTCAGCGCAACTCAGCAGAGGCGGCTAAAGAGACCCAGGTTCAGCCTGTAGCTGCTGAAGCCACTACAGTGACAAGTTCCCAGAATGAAGCCTTCACACAGTCCGTCACCATGATGCCTGTGCAGATCCCAGTGGCACAGACAGTCCCTGCAGTGGGACTGGTGCCGCCTGCCTTCCCCGTCACAATGGCAATGCCCCCGCCAGGTTTTGGCCCGCCGCCTCCCTTCCTGAGGGCAGGTTTCAACGCCTCACAGCCTCCTCCTGGCTTCATGGCAACACCTGCTGTTGCCCAGTCAGCTGTTGGAACTGGTCTTGCCTCAGCCCAAACCACTCTGTTGCAGTCTTCGATGTCAGCTGCTCAAGAACACAACAAGGACTCCACATTTGGAGGCTTAATTCCTCCAACAAGCTCCATTCCAGCAGGATTCATCCCCTCAGCAATGGCAGGAGCAGGAGTCTTTAACCCTgcagagcagcagcagcagcagcacatgcTCAGCAGGCTGGTGCTGAAAAGACTCCCATCTACAGAGAGCATGGACACGCCTACAGAATTAACACTACAAGGAATGCAGAATGCAGCACGCAGTGGAATGGGGCTGCTAGGCATGCATCCTGCTGCATCTCTTTCTCATCCTCTTGCTGGACAAAGACTGCCCGGTATGCTGCCCCTCGATCTGCGACCCAGCCTCCTTCAGGGAGCTGGAGCCCGCTTCCCACTCCTGATGCAGCAGGGCCTGGCTCAGCAGGCCAACAGCCTTCTGGATGCCTCCCTGCAAGCCCAGGCCCGTGCTCGAGCTCCTTTCTCTCAGATGGAGCACTTCAACAGGACGGAAGGAGCCTTCGCGAGAACCCCAAACCCTGCAGCTGCTGGAACTGATAACCTGGACAAGGTTAACAACGAGACACCTAACAGTTCGAATGCTGGAAACCAGCAAGAGGGTGATCAGGACTATCGCTTTCCACCACCTGAAAAACAGAGTACAGGTCTGCTGAAAACTCCTCCACTGGAGATGCGTACGGAGCCCACCCCTGTTAGACCTCCACTGCTGGAGAGGCCAcctagaggaggaggaggcatgCAAGGAGGTGCCATGCAAGGCGGAGGAGGTGGCATGCAAGGTGGAGGAGGCATGCAACCTGAGAACAGAGAAGGACCAGGAAGGAGGGATTCCCTGCCAGGTGGTTTCCGAGGAGAGTCTCGTTGGGGTCCTCCACGAGGAGACTTTGATGAGCGTGACATCAGAGGAATGCCAGCAGGAGCCCCCAAGGGCTTCCAGGAGGATCGTCCTAATCCCAACTTCCAGAATCGATTTGAGATGCGCCCTGGAGGAGTcgcaggtggaggaggaggaggcccAGCCTGGAACCGTGGAGgcggaggaggagcaggaggaggtggaggaggggcCTTCAACGCCAACATGGACTTCGATGACCGTCGCCGACCCTGGGAGAGACAGAAGGACCGCGACGACCGTGATTTCCGCAGGGAAATGAACGGCAACCGGCACGGTCGAGAGCATGACCGCGACAGGGACCGGGAGAGGGACCGAGACCGTGGACGAGATCGCAATCGCGAGcgcgagagagaacgagagcgAGAAAGGGATCGAGAcagggacagagagagggaacgaGAGAGGGAGCGTGATAATAACGACAAGGAGAAGGAAAGAGATCGAGATCGGGATCGAGAACGTGGCGGCGGAGGCGGTGGTGGCTGGACACCACTCCCCCAACAGCCCCTACTCCCTCTTCCCAAACCTCAGTCCCAGCCTCTACTCCCTCTGCCCACTCCCCTACTGAACCTGCCCCAATCCCAGCCTGAATTACAGCCTAAACCACTGCTGCCACACCCGCCGCAACAGGAAGTGCATCGGCCCGAGCTGCATCACCCAGCACGACAAGCCGAACCTCAGCCTGAAGTAAAGCCTCAACGTCAGCAGCCTCAACCCCAGTCGCCCGCTGCCCCTGAAGTGACCACGGACAGCACAGTGAAAAAAGAAGACTGTGATGTGAAGGAGGAGACCTCAGACTCGAAACCTGAGATTAACCTCATCGAGCCCAAGCCAGAGCTCGTTCCCGAGGCTTCTCGCACCCCCTCTCCTCCTTCTGATCCCACAGCCACGCCCACAATCATCCCCGACGAGCCCCCAAAACAGGAGGAGCCCTTACAAACACCCACACCCCCCCTCGCGGTTAAAGACAGTGAACACAGTGAACAGACTGGGCCGAAGGCAGAAGCTGAGACTGATCCTGAGCTAGTGAAAACTGACACTGAGGAAGCATAATCATCACTCAGTAGGTAAAAGATCATTTTGTATAGTTGTCATCTCTGTACTTATTTCAAAGGCTTCCACAGGACCTGCTCAGTTCATGACATTGCTGCCTGACACCCTAACAAATGATTTTACGTTTCACGCTAATGATGTACATCATAGATGGCTCTCTATAGAGGATTTGAATGGTAggtgatatattttaaatattttattttaattgttattttatgtttttttagttttaatgcaAGCCCACTGTTTTAAACTAGGTGAATACATGGAACTTTCTTGCCAAAATATTGTGTAGCCTAATTGTAAATGCTGGGGTGGGTGGGGGCGATTTTGCTCGGGGGTGCTTCGACCTTCCTATGGAAGAGTGTAAGGATCCTGGCTTTTTCTAATGGTTTGATTGCAGAATACTTGAAAACAGCGGTCACTGGCCTgttctgtcttttcttttcaaaaaccgCAGCCGCAAAAGTTTGAAATGAATGCCATTGTGGTGTCCTATGCTTGTTGTCTATTAAGCAAAACCAATGCAGTGAGAACAGTGAGTTTTAGTTGCTTTaaaaggaaccaaaaaaaaaaaaaaaaagattaaaatatgaTGTACTATCCCCATGTTAAATGTCTGATTTTTCTTCATCAAACTGCAGTGAATATACAGCCGTTCAGCCAGAAAAGCTTGCGGAAAGACGAATGGATTTTGGGAGCACTCTGTTTTAGTTTCAAATAAACATGCTTTGTTTGTTAAA

Function

symbol description
scaf8 Orthologous to human SCAF8 (SR-related CTD associated factor 8).

NR:

description
PREDICTED: protein SCAF8-like isoform X1

GO: NA

KEGG:

id description
K13191 RBM16, SCAF8; RNA-binding protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673213.1 True 4991 mRNA 0.52 22 35557208 35600287

Neighbor

gene id symbol gene type direction distance location
tiam2 tiam2 coding downstream 46463 35348184 ~ 35510745 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding downstream 219746 35321469 ~ 35337462 (-)
LOC103041141 LOC108423399 coding downstream 361878 34870145 ~ 35195330 (-)
zdhhc14 zdhhc14,LOC106574720,LOC105897223 coding downstream 690134 34799139 ~ 34867074 (-)
LOC103040637 si:dkey-16j16.4,LOC108423460,LOC107697539,LOC107566112,LOC107553735,LOC107656750,LOC108270219 coding downstream 1647201 33857299 ~ 33910007 (-)
LOC103042065 LOC108437746 coding upstream 6799 35607086 ~ 35632755 (-)
LOC103031708 LOC103031708 coding upstream 94262 35694549 ~ 35718212 (-)
LOC103039887 LOC108437743 coding upstream 290790 35891077 ~ 35911845 (-)
kcnk13 kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 coding upstream 321194 35921481 ~ 35934896 (-)
tdp1 tdp1 coding upstream 369350 35969637 ~ 36045110 (-)
G85926 NA non-coding downstream 2019 35554860 ~ 35555189 (-)
G85922 NA non-coding downstream 12782 35543952 ~ 35544426 (-)
G85915 NA non-coding downstream 176628 35375049 ~ 35380580 (-)
G85906 NA non-coding downstream 225529 35331081 ~ 35331679 (-)
G85884 NA non-coding downstream 256305 35201480 ~ 35300903 (-)
G85955 NA non-coding upstream 4091 35604378 ~ 35605763 (-)
G85970 LOC108437745 non-coding upstream 67476 35667763 ~ 35672891 (-)
G85980 NA non-coding upstream 125862 35726149 ~ 35726664 (-)
G86015 NA non-coding upstream 149277 35749564 ~ 35749814 (-)
G86016 NA non-coding upstream 149577 35749864 ~ 35750233 (-)
G85902 tfb1m other downstream 262174 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 1085603 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1544646 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 1717579 33834012 ~ 33839629 (-)
G85550 NA other downstream 2038537 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 988617 36588904 ~ 37101581 (-)
G86432 NA other upstream 2382587 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 4207843 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4933081 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 5162385 40762672 ~ 40770501 (-)

Expression


Co-expression Network