LOC103031521 (flrt2)


Basic Information

Item Value
gene id LOC103031521
gene name flrt2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 39045638 ~ 39056797 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673283.1
gcgcGCGCGTATGTGCGCGTGCGCGGCCAGCGCTGGAGAGTTTGCCATGGCGCGCGCTGCTCGGCTGCTGCTCCGCGCGGCGCCGCGATCAGACTGAAGCACCGGGAGCGCGAGGAGGAAGGGAGAACGGACAGAGCGCGCGCGCCTGAGACACAcggagagatagagggagtgCGCGAGGGAAGGAAAGAGAAGAGTGAAGGAGGGAAAGGAAataaaggagagagggaggccGATGTGTTCGTCCTGCTGCTGCCGGAGGGGCACGCGCACACACCCCGGAGCTACTGGAGATGCGTCGGCGCGCCGCGGAGAGGCGAGGAGCCTCGTGCACACAGGTAAATGGAGCCTGGCTCCCCCCGCCAGCGAGGCCGTGTCATTCAGAGACCAGCGGCCTGTGACCGGAGAGGAGGGCGCCGCTGATAAACCTCGCGGCACACGCCGCTTTTTTGGTGCCCGCTCTCGCGCACACACTTAAAACTAGCCCTCTGCGGCCTCGCACTGAGAAAATGTGATGAGCTTTTCGCTATCAGTCCCGGCCCAAGCATGGATGGAGGCAAACGAGGGAGGCACGCGAGTTAATGAGACCATTGCTCTTGTGTTGGGGGGGTGGCTTAGGAGAGGCAATTACAGGAGGATTACCCGCACACTACTTCTCCAGCACGCCGGCTCGGCACGGCACGGCATGGCGAGCTTCAAGAGCCGCTAAAAACTTCTacttcttattcttctttttcttcgcCCTGGTGGaatttattccttttttattttttgctttgatTACTACCTGAAGCGGCGCTTCTGTGTTtttactatttcatttttttacacatttacgaTTTTtgctggctgtttttttttttctttcctctttttcGCCTCCACGCGAAAAAAAATGGAGTTACAGGTGCGGATATGGAATAAAGATGTGACAGCTTTTATCAGGCCATGGATACCCATACTTCTAGGCCTTCACATGCAGTTCTCCTGGGCCACGACGTGCCCAGAGGAGTGCCGCTGTGACAGGACCTTCGTGTATTGCAATGAGAGGAGTCTAACTTCAGTGCCTCTTGGGATCGGTGAGGGCTACAAGACCCTTTACCTCCACAACAACCAAATCAACAATGCTGGATTTCCGCTGGAGCTGCACAACGTTGCCTCGGTGGAGACGGTGTACCTGTACGGCAACCAGCTCGACGAGTTCCCCATCAACCTGCCCAAAAACACACGAGTGCTCCACCTGCAGGAGAACAACATCCAGACCGTTTCTCGGGCCGCCCTGGGTCAGCTCCTGCGTCTGGAGGAGCTTTACTTGGACGATAACTCCATCTCCACTGTTGGGGTGGAGGAAGGGGCATTCCGAGAAGCTATCAGTCTCAAAATCCTCTTCCTCACCAAAAACCACCTAAGCAGCATTCCCATCGGGCTTCCCGAGGAGCTCAGGGAGCTGCGTCTGGATGAGAACAGGATAGCCCTGATCACGGACGACGCGTTCGAGAACGTTACCGGGCTGGAGCTCCTCCTTCTGGACGGTAACCTCCTCACGGACGAGGGCCTCGCGTCCAGAGCCTTCCAGAGTTTATCCAGCCTGAAAACTCTGTCGATGGCACGCAACTCCTTGATGCTTCCGCCCCCTAACCTGCCCACCAAGTGTTTAGTCAAGCTCAACTTGCAGGACAACATGATGAATGAGATCCCTGTGACGGCCTTCCACGGCCTCCACCGCCTGGAGAGACTGGACATTTCCAACAACCAGCTGCAGTCCCTCACACAGGGGGTCTTTGACGGCCTCCGCAGCCTGAGACAGCTCACTGTTCGTAACAACCTCTGGCACTGTGACTGCGACATTAAATGGGTCATATTGTGGCTCAAGTCCCTGCCGGCCACCCTCAACGTCCGCGGCTTCATGTGCCAGCGGCCCGAGAGTGTGCGCGGTATGGTAATCAGAGAGCTGAACCTGGAGACGATCCAGTGCCCCGGCAGCACAGCCACAGTGCCACGATTCACCCAGCAGCCTGCGCTGGCCGTTTTTCCTACCGCTGAGTCATCCGCCACTGAAACAGGCTTCATCTCGCCACGTGTTCCTACTTCTAGTGTGACGTCGTCGCAATCCACATCATCCGGTGCTGCTGCCACCGCCGCGTCACCAACCAGGCACACAGCACACGATGCAAAGGATCGAGGTAAAGAGGGTAAGGAGAGCAAGGAGACTGAGCGACCGGATGCGCCAGAGCGACCAGACGCGCCGGAGAACCCTGTGCAAGAGTCTCTGCGAGTTTCCTTCATTGTCTTGAACAGCTCCTGCGTTCAAGTTAACTGGATATCCACCTTCACGGTCACGGCCTACAAGGTTACCTGGGTCAAGTTGGGTCACAGCTTGGTCAGCGATCCCCTGCAAGAGACCGTGGTCGACGGGGAGCAGCAGGGAATCAGACTGACCAACTTGGAGCCCAAATCCATCTACCAGATTTGCGTGGACCCGCTGGATGCTTTCAACAACTACCACCCGGGAGACGATACCATTTGCTCGGAGGTGATGACCAAATCCGCCTCGTTTGACTCGAACGAGAACGGGGCGGGACCCGAGCAGGCCAGCCAACAGGACCTCAGTTCCTCCATCCTGCTGGCCGGCCTGATCGGAGGGGCGGTCCTCATCGTCCTGGTGGTGCTGCTCAGCATTTTCTGCTGGCACGTGCACAAGAAGGAAAGGTCAGAATCGTCCAAATGGAAATACAACCGCGGCAGGAGAAAAGACGACTACTGCGAGGCGGGGACCAAAAAGGACAACTCCATCCTCGAGATGACCGAGACTAGCTTTCAGATAGTTTCTTTAAACAACGAACAGCTCCTCAAAGGAGACTTCCGTATCCAACCCATCTACACGCCCAACGGAGGCGGCATCGGCTACAGAGACTGCCCTGTGGCCAACAACAGCACAGCTTATTACAAGAACAGCGTTCCAGAGTCTAACCCTTGCCATACATGATGGTTTTCCAAAAGGTATCATGAACATCAGTGTCAGCATCATCCTTTGTATTCCAGTTCAACTTAAACACACTGTATAGTATATATTTCAAAGAGGAACTGTAAATGATGTAATTTATACTCTTATCAGTGATATCGCCTTCTTTTATACCCCCAGTAAAGCGCAAAAATCAAGTCAATTTTGAGCCGATTTATGGTTTATGATTTATAATTTTACGAGTTTATGATTTTATGAGTTGATGAATTCCTACTGTTGTGTTACTGCTCCAGAGATAGCCTTACGAATGAgaacagacatttttttaaagccctcgtaaagaaaaaagaaaaaaataatctcaTGATGTGTCATGATCTCATCGAGCTGGAGTGTGTGAACGCAGAtactttttacagtttacagtgttgtgcacaatgaacaaaaaaagacgaagaaaaaaaaaactcccagaAAGTGCCCAGAAATTCGTGGATATTTATGTAGACGTGTAGAAAGGAAATGGTGAAGAGCCGGAGAGCAGGGGAGTCGAGGAGAGTCGATGAGTGTCTGCTGTGTTTGTGAGCGAGCaaatgagtgagagagcgagcgagagaagCAATTCACATTATTTATGCTTGACTTCTTTGTTCCTTAGTCACGCCACAAGGTGGCATCTTTTTTCATGTCTGACATTAATTGGCACCTTCCAGCTGGAGCATTCACCTGTGCACTGTGCGGACGTGTTCTGCACAGGCGGCTCTCTGCACAGAGACCTGCTTCTACCCAGGCAAAGCCATTAAaatgcaccttttttttttttaagtgttgatGGAAATAAGTGCAAAAACAggttttctattattattaaaaagcttaaacttgctgtgtgtgtattagggATGTCATGgtaacagattgcaaaattctATGATTGTAGATACTATTTTCGATTAAATCTTAAATATACCaattaaatgaatgtattttaatgtgaaaacttatttaaaaacaatccGCAAAAATAAATCTGCAATTTATTTTTCTCTAGCCGTTGggtgaaaactgttttttcctctttaaatgataaatgataaaaaaaatagccataATTGgctttaaacaaatattaaatacaatattgcGTCCAGAAATCCAAAACAAACTAACTTTTTGGTgggatttgattttattaaattaccCAGCTGTCTAAAATATgac

Function

symbol description
flrt2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neurons; pronephros; and solid lens vesicle. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2).

NR:

description
PREDICTED: leucine-rich repeat transmembrane protein FLRT2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673283.1 True 4183 mRNA 0.50 2 39045638 39056797

Neighbor

gene id symbol gene type direction distance location
LOC103041717 galc,LOC108444013,LOC108269778,LOC107372531 coding downstream 163684 38862143 ~ 38881954 (-)
ak7 NA coding downstream 188638 38836859 ~ 38857000 (-)
LOC111193258 NA coding downstream 264350 38772028 ~ 38781288 (-)
vrk1 vrk1,LOC106602366 coding downstream 347307 38665125 ~ 38698331 (-)
hhipl1 hhipl1,LOC107740569,LOC107668615,LOC107680789,LOC107588281 coding downstream 1428628 37601408 ~ 37617010 (-)
gsc gsc,LOC107750880,LOC107668603,LOC107671116,LOC107717065 coding upstream 629013 39685810 ~ 39692043 (-)
clmn LOC107583621,LOC102791389 coding upstream 817455 39874252 ~ 39940026 (-)
syne3 NA coding upstream 939717 39996514 ~ 40065403 (-)
LOC103047513 gabrr2a,LOC108435431,LOC108269496,LOC103368039,LOC103138775,LOC107755784 coding upstream 1014074 40070871 ~ 40120053 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding upstream 1098838 40155635 ~ 40194943 (-)
G86584 NA non-coding downstream 185305 38859525 ~ 38860333 (-)
G86493 NA non-coding downstream 495327 38549852 ~ 38550311 (-)
G86487 NA non-coding downstream 532344 38501266 ~ 38513294 (-)
G86486 NA non-coding downstream 550255 38495160 ~ 38495383 (-)
G86465 NA non-coding downstream 788379 38254686 ~ 38257259 (-)
G86596 NA non-coding upstream 1224 39058021 ~ 39060498 (-)
G86625 NA non-coding upstream 228467 39285264 ~ 39287914 (-)
G86632 NA non-coding upstream 271984 39328781 ~ 39329078 (-)
G86646 NA non-coding upstream 380929 39437726 ~ 39438038 (-)
G86656 NA non-coding upstream 420258 39477055 ~ 39477373 (-)
G86432 NA other downstream 976586 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 1944057 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 3750604 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 4574033 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 5033076 33955195 ~ 34012562 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 751333 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 1476571 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 1705875 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 2716270 41773067 ~ 41804888 (-)

Expression


Co-expression Network