LOC111193169


Basic Information

Item Value
gene id LOC111193169
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3572023 ~ 3620248 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650298.1
TTCCCAGGGCGGGAAGGAAGAGAATTAGGGCCAGGCtttaataatactactactaataataataataatggcgTTTTATGATAAACCAATGTCCTCAGACTTCTTACTCTCCTCAGACAGGAGCGTCATTTCAGCGGAAGAGATAAGAAATGAGCTAACTGCCCATTAGCGAGTCGCGCGCCCAGAGGAGCTGCAGTCGGAACAGACAGGCTGTCCAGAAGAAAGAGTAAACAAACCTGCGACAGCCTGCGCCTTCACCAAGAGGACAGAAGACAAGAGGTGCCCTTCATCCTGCTCCTCCACCCTGCAGCGCTCCCTATAACCACACAGGGATGTATGAATGAACTCCTGCGCCTGATGCCAGCTCTGACTTCCTCGTCAAGCCGCCGGTTCAGCACACACATCAGCACCCCGCTGCACCATTGTGGCCCGAATCCTCGTCGCCGCATTGGGCATTCCTTCCACGTTTGTGCCGGCACAATGGCAGCCCAGCAtgttttctccccaattcatCCGAGGTCTTCCTTTCCCAGTCCTgcacattttttcttttgatgCCAGCTATCATCTCCAGCTATTTGTGGGAGGACTCTGCGGAATCCTATAGTCAGCATATAGCGGGCATAATGTCGCCCATCTGTTGTCACACCTCAGGTTTCTAGGTGTAGAACGCGGGCCGCTGACGGACGTCTCGTTCTCCGGGATTCGCCACGGCTCAGAAATATTACCTGCTGTCTTCATCTTTTGGAAAGGACGGGGCCTCGTCAGTCCAGAGGCCGGGTCTGAATGGAGCTTGGGCTTTTCTTTGTCTAAGATAGAGTTGCTGCCATGCATGCAGTTCAATTGCAGGCTTGGAGAGGGACTCTGTGGGAATTAGCAGCAGGAACAACACTCCAGGCCCTCAGATAATGGACTTGGTGAATGTCCACCATCTGGTGTTTGTTTAATACACAGAGAAGGTCAAATGGCCTGCAATCCTTTTCTGCTCTCCTGCATTCAGGCCTCGGATTGGGGAAAATCATTGATTTTACTCCTCCACCCGAAGATCTTTGTGTGCCGGAGCTCAGTATGACAATGACAACAAGCTTattgcttaaaacagcactcAGTGGGACTGAAACAACCTGAATTCAGTCTGGGAAGTTGTTGCCCGGTGGTGTCCTTTTGGTTTTATTAAAGCCCTCTCTTGAACAAA
>XR_002650299.1
ttttattcatcattAAAGTCACCTCACCCAACTAGCTGGCAGCAGTAGTTAGCTATATTCACACATTCCTAATATAGAGGATAATGGACAAAGAGGAGCTACAGAAATGCCACGAATTTAAGACAGGAGCGTCATTTCAGCGGAAGAGATAAGAAATGAGCTAACTGCCCATTAGCGAGTCGCGCGCCCAGAGGAGCTGCAGTCGGAACAGACAGGCTGTCCAGAAGAAAGAGTAAACAAACCTGCGACAGCCTGCGCCTTCACCAAGAGGACAGAAGACAAGAGGTGCCCTTCATCCTGCTCCTCCACCCTGCAGCGCTCCCTATAACCACACAGGGATGTATGAATGAACTCCTGCGCCTGATGCCAGCTCTGACTTCCTCGTCAAGCCGCCGGTTCAGCACACACATCAGCACCCCGCTGCACCATTGTGGCCCGAATCCTCGTCGCCGCATTGGGCATTCCTTCCACGTTTGTGCCGGCACAATGGCAGCCCAGCAtgttttctccccaattcatCCGAGGTCTTCCTTTCCCAGTCCTgcacattttttcttttgatgCCAGCTATCATCTCCAGCTATTTGTGGGAGGACTCTGCGGAATCCTATAGTCAGCATATAGCGGGCATAATGTCGCCCATCTGTTGTCACACCTCAGGTTTCTAGGTGTAGAACGCGGGCCGCTGACGGACGTCTCGTTCTCCGGGATTCGCCACGGCTCAGAAATATTACCTGCTGTCTTCATCTTTTGGAAAGGACGGGGCCTCGTCAGTCCAGAGGCCGGGTCTGAATGGAGCTTGGGCTTTTCTTTGTCTAAGATAGAGTTGCTGCCATGCATGCAGTTCAATTGCAGGCTTGGAGAGGGACTCTGTGGGAATTAGCAGCAGGAACAACACTCCAGGCCCTCAGATAATGGACTTGGTGAATGTCCACCATCTGGTGTTTGTTTAATACACAGAGAAGGTCAAATGGCCTGCAATCCTTTTCTGCTCTCCTGCATTCAGGCCTCGGATTGGGGAAAATCATTGATTTTACTCCTCCACCCGAAGATCTTTGTGTGCCGGAGCTCAGTATGACAATGACAACAAGCTTattgcttaaaacagcactcAGTGGGACTGAAACAACCTGAATTCAGTCTGGGAAGTTGTTGCCCGGTGGTGTCCTTTTGGTTTTATTAAAGCCCTCTCTTGAACAAA
>XR_002650300.1
TTCCCAGGGCGGGAAGGAAGAGAATTAGGGCCAGGCtttaataatactactactaataataataataatggcgTTTTATGATAAACCAATGTCCTCAGACTTCTTACTCTCCTCAGACAGGAGCGTCATTTCAGCGGAAGAGATAAGAAATGAGCTAACTGCCCATTAGCGAGTCGCGCGCCCAGAGGAGCTGCAGTCGCAATAGGAACAGACAGGCTGTCCAGAAGAAAGAGTAAACAAACCTGCGACAGCCTGCGCCTTCACCAAGAGGACAGAAGACAAGAGGTGCCCTTCATCCTGCTCCTCCACCCTGCAGCGCTCCCTATAACCACACAGGGATGTATGAATGAACTCCTGCGCCTGATGCCAGCTCTGACTTCCTCGTCAAGCCGCCGGTTCAGCACACACATCAGCACCCCGCTGCACCATTGTGGCCCGAATCCTCGTCGCCGCATTGGGCATTCCTTCCACGTTTGTGCCGGCACAATGGCAGCCCAGCAtgttttctccccaattcatCCGAGGTCTTCCTTTCCCAGTCCTgcacattttttcttttgatgCCAGCTATCATCTCCAGCTATTTGTGGGAGGACTCTGCGGAATCCTATAGTCAGCATATAGCGGGCATAATGTCGCCCATCTGTTGTCACACCTCAGGTTTCTAGGTGTAGAACGCGGGCCGCTGACGGACGTCTCGTTCTCCGGGATTCGCCACGGCTCAGAAATATTACCTGCTGTCTTCATCTTTTGGAAAGGACGGGGCCTCGTCAGTCCAGAGGCCGGGTCTGAATGGAGCTTGGGCTTTTCTTTGTCTAAGATAGAGTTGCTGCCATGCATGCAGTTCAATTGCAGGCTTGGAGAGGGACTCTGTGGGAATTAGCAGCAGGAACAACACTCCAGGCCCTCAGATAATGGACTTGGTGAATGTCCACCATCTGGTGTTTGTTTAATACACAGAGAAGGTCAAATGGCCTGCAATCCTTTTCTGCTCTCCTGCATTCAGGCCTCGGATTGGGGAAAATCATTGATTTTACTCCTCCACCCGAAGATCTTTGTGTGCCGGAGCTCAGTATGACAATGACAACAAGCTTattgcttaaaacagcactcAGTGGGACTGAAACAACCTGAATTCAGTCTGGGAAGTTGTTGCCCGGTGGTGTCCTTTTGGTTTTATTAAAGCCCTCTCTTGAACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650298.1 False 1195 lncRNA 0.50 3 3572023 3618454
XR_002650299.1 True 1201 lncRNA 0.50 4 3572023 3620248
XR_002650300.1 False 1201 lncRNA 0.50 3 3572023 3618454

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 268456 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 667375 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 676342 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 696387 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 819767 2673416 ~ 2752256 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 261071 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 297408 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 336078 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 374312 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 426815 4047063 ~ 4277821 (-)
G77941 NA non-coding downstream 56743 3514696 ~ 3515280 (-)
G77919 sptbn5 non-coding downstream 140617 3430165 ~ 3431406 (-)
G77912 NA non-coding downstream 177119 3394349 ~ 3394904 (-)
G77902 traf3,LOC107719479,LOC107697656,LOC107590913 non-coding downstream 212320 3356530 ~ 3359703 (-)
G77894 rcor1,LOC107719500,LOC107590914,LOC107733187 non-coding downstream 253458 3310420 ~ 3318565 (-)
LOC111193170 NA non-coding upstream 12846 3633094 ~ 3638915 (-)
G78019 NA non-coding upstream 193687 3813935 ~ 3814733 (-)
G78022 g2e3 non-coding upstream 203197 3823445 ~ 3825615 (-)
LOC111193171 coch non-coding upstream 250313 3870561 ~ 3872428 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding upstream 256507 3876755 ~ 3879254 (-)
G77892 NA other downstream 223034 3297582 ~ 3348989 (-)
bmf bmf other downstream 365337 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 527260 2964024 ~ 3044763 (-)
G77656 NA other downstream 1381370 2190313 ~ 2190653 (-)
gchfr gchfr other downstream 1416675 2150788 ~ 2155348 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other upstream 24849 3645097 ~ 3714357 (-)
G78023 scfd1 other upstream 214314 3834562 ~ 3840570 (-)
G78083 NA other upstream 425186 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1564544 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3578661 7198909 ~ 7220854 (-)

Expression


Co-expression Network