G10275


Basic Information

Item Value
gene id G10275
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13485033 ~ 13486056 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13888
TTCTGTAATGGGGTggggagcagtagctctccagcccagaaggttgtaggacccaagtgcagagcagcagatctcaaggcaggtaaacccaagaagaaaaaaaaatagaaaaattgtaataataaataataagtattatatataaatatatatatatatataatttttatagttCAACCCCACCCTACGTGGGGATCGAACCCGGGCTGTCGCGGTCACGGCccaatgctctaaccgctgcaccagcgagcggattgggacgcggccgctttAATCACCTTTAGAAGAGCCGCCGAAgggggggcggagctacaaaaaCGGGCGGAGAATAAAAAACGagagtaaaacaaaacaaacccgAAAACGGGCGGACAAACACAAAATGGCGCAGAGCGCGAGTGAGGGAGAACCGAGGATCGCCTGGGAAGCGAGGCTGCCCCTTATTTTCGGGGAGATAAAAGGAACAACTTCCCAACTAAAACAAAGGTAGGACAATTGGTGCTTGTGGGGGAACAAAGAGGGCAGCCACGTCAGCGCGCTGCcgctgttacacacacacacacacacacacacacacacaggagagagcACACAGCTCCACCAGACTCGAGAGGGAGAGGAAAGGGATAGAGGAAGATACTTATGCGGGAGAGGCACGCCAGCGATGCTGATCAATGCTCTCTCCAAAGGGATAGcagggaagaaaagagaaaaagagccgAGGCTCGCTTGAAAaacgggcatagattcgctctcacgagcttcaaagatccagcgccgagtggctggttggcgTTGCTTTTAAAGTGTTGATagcaggtgttggtaattagcctaattaaccctcggcgctggtctggcgcgccctccgatgccctggAGGATGCCTCGGTTggccaccagccctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13888 True 908 lncRNA 0.51 2 13485033 13486056

Neighbor

gene id symbol gene type direction distance location
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 483938 12895896 ~ 13001095 (+)
LOC111188181 LOC108432168 coding upstream 1000455 12474217 ~ 12484578 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding upstream 1013779 12468650 ~ 12471254 (+)
LOC103031044 NA coding upstream 1021780 12451903 ~ 12463253 (+)
gaa LOC106601771 coding upstream 1183319 12283270 ~ 12301714 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 615810 14101866 ~ 14112197 (+)
LOC111194173 NA coding downstream 715295 14201351 ~ 14213960 (+)
LOC103039204 NA coding downstream 739127 14225183 ~ 14230983 (+)
LOC103036166 LOC108427338 coding downstream 746173 14232229 ~ 14242075 (+)
LOC103037400 LOC108427346 coding downstream 864456 14350512 ~ 14352765 (+)
G10266 syt3,LOC106593647,LOC107680842,LOC107732896 non-coding upstream 28449 13414402 ~ 13456584 (+)
G10263 med25 non-coding upstream 97112 13378907 ~ 13387921 (+)
G10261 NA non-coding upstream 106981 13375832 ~ 13378052 (+)
G10256 NA non-coding upstream 144791 13338232 ~ 13340242 (+)
G10242 NA non-coding upstream 180806 13304017 ~ 13304227 (+)
G10301 NA non-coding downstream 98307 13584363 ~ 13584589 (+)
G10312 NA non-coding downstream 155854 13641910 ~ 13645056 (+)
G10317 NA non-coding downstream 170994 13657050 ~ 13671777 (+)
LOC103033075 NA non-coding downstream 187842 13673898 ~ 13677638 (+)
G10333 NA non-coding downstream 265499 13751555 ~ 14003369 (+)
G10200 LOC107747660 other upstream 349915 13134601 ~ 13135118 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other upstream 663042 12774213 ~ 12821991 (+)
G10003 NA other upstream 866836 12613691 ~ 12618197 (+)
arhgap17 LOC108432202,LOC108279379 other upstream 884503 12527689 ~ 12600530 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other upstream 1103685 12302527 ~ 12381348 (+)
G10362 LOC108427334 other downstream 528296 14014352 ~ 14020095 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other downstream 631556 14117612 ~ 14164106 (+)
LOC111193423 arl6ip1,LOC107658451 other downstream 828736 14314792 ~ 14398695 (+)
LOC103036470 NA other downstream 830351 14316407 ~ 14321860 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other downstream 875809 14361865 ~ 14371518 (+)

Expression


Co-expression Network