G10359 (ppp1caa,LOC103034594,LOC105897688,LOC108413689,LOC105894037,LOC108280818)


Basic Information

Item Value
gene id G10359
gene name ppp1caa,LOC103034594,LOC105897688,LOC108413689,LOC105894037,LOC108280818
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14042602 ~ 14047265 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14002
AGTTTCAAAGCTTCTGTGATCCATCTACAAcaaaaaaacgaaacaaaaaaaaaagaaacaaaaaaaaaccaacagTTTCAACATGATTGTTTCTCAAATCACAGATTCTCTAAATGGAAAATGATGCACCTGTGGCGAGCTCTTCCCTCTTTATACAGTCACCGCACATCCACGCAATGCTGCCAGCATCTTCCTGCACATTTCAACTACTCTCCCAGTCATAGGGGGTGTGGgtgggcatgtgtgtgtgtagaaatatgaaagagcatgtgtgtgCGCACACATCTGTGTTACAGTTCATAATATTCAATCAGAGACCACTACCTAAGAGAGGATGTGCAGCTGTGTGTTTTCAGCATTGAAACAGTGACACCTAAGAAAAGTGACACCTAAGAAAAGGGTCACCACCTACGCCTTTCTCTGGACCACTGGTGCGCCCCTCGCTCTCTTCTGACCATTAGCATGACTCTTCTGGGACAGAGAGACTGGCCAGTGAGTGGGGAGGGCAGGGAGAAAGATGGgtagaagaaagagagagagatggagagaaaggaggagagaataaaaaaaacaaaaacaaatagaagAAACAGTATAACAAACCTCACAGACGGTCCATTCACATTAatacacgcatacacacactcactgcatcgaagagaaaaggaaaaacaattgagaatgagagaaaaaaaaaaaagaaaaaaaaagagagaaaggactTTAAACCCTGGGTACTGTTTTGCTTTGTTGCCATTTGGTGACAAAGGGGAAAAAAGCAGGGAGGTAGAGAGTGGGGTAGGGTGGAGGGCGAGAGGGGTAAAGGACTGCTCCAGTGTTTTTCAGCTAATATCGATCTGGCTGCATTTGTAACATTGTAATGTACCATAGACTCAAAACCACTTAAAACAGCAGCCAATGAGCAGAAGCTTCATTGACTTCCATTCTAAACGTCCGTGTGTGTTTCAAATCAACAGACACCGGGTGTGGacgagagcaggagagagaagcCAGCCGTCAGCTACGGGCGCAGCAAGCAGAAATTAGGTGATAAAACACTGGAGGAGGATTCCTTTTAAAAGGGGGTGGGATTAATGGGGGTGGTCCAGCTGGTGCTATTTCTTGGCTTTTCCACCCTTGGCAGAATTGCGCGGCGGAGTGACCGGACGCCCTGAgcccattcctcctcctcctccgtaCGAATACAGCTTCTTATCGGCAGGCTTGAGGATCTGGAAGGAGCACATGAGCGTTTCATCCACGCTCATCATGGCTCCAGCATTGTCAAACTCTCCACAGTAGTTTGGAGCAGAGAACAGGGTGACCAGCTGTCTCTTAGCAAAAAACTCGTAGCCATCCTCAACCACCTGATGTGCCCTGCATATGAGGTCCATGTCGTGCTTGTGAAGGAATTTGGCCACCACGTCAGCACCGAAAGTGAAGGAGACTCCACGGTCGTTCTCGCCCCAGCCCAGCACGTCTTTATCTGGGTCAGCCCACAGCAGGTCGCACAGCAGGCCCTGATCCGGCACGTCTGTGGGCCGCATCACACGCCGCACCTGCTCCATAGACTGCAGGTCTGGAGAAAGACCTaacaaggggaaaaaaagaaaatgcacaaTGGGAATTGGTTAGAGCTGCATCAGGA

Function

symbol description
ppp1caa Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within convergent extension. Is expressed in brain; digestive system; eye; otic vesicle; and pectoral fin. Orthologous to human PPP1CA (protein phosphatase 1 catalytic subunit alpha).

NR:

description
serine/threonine-protein phosphatase alpha-2 isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14002 True 1648 lncRNA 0.46 3 14042602 14047265

Neighbor

gene id symbol gene type direction distance location
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 1041507 12895896 ~ 13001095 (+)
LOC111188181 LOC108432168 coding upstream 1558024 12474217 ~ 12484578 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding upstream 1571348 12468650 ~ 12471254 (+)
LOC103031044 NA coding upstream 1579349 12451903 ~ 12463253 (+)
gaa LOC106601771 coding upstream 1740888 12283270 ~ 12301714 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 54601 14101866 ~ 14112197 (+)
LOC111194173 NA coding downstream 154086 14201351 ~ 14213960 (+)
LOC103039204 NA coding downstream 177918 14225183 ~ 14230983 (+)
LOC103036166 LOC108427338 coding downstream 184964 14232229 ~ 14242075 (+)
LOC103037400 LOC108427346 coding downstream 303247 14350512 ~ 14352765 (+)
G10360 NA non-coding upstream 2868 14038961 ~ 14039734 (+)
G10366 NA non-coding upstream 8123 14034115 ~ 14034479 (+)
G10365 NA non-coding upstream 13979 14028250 ~ 14028623 (+)
G10364 NA non-coding upstream 20242 14021679 ~ 14022360 (+)
G10361 NA non-coding upstream 28361 14012046 ~ 14014241 (+)
G10358 LOC108427304,LOC105897688,LOC103034594,LOC108280818,LOC101477563,LOC107378498,LOC103367324 non-coding downstream 4391 14051656 ~ 14083077 (+)
G10495 NA non-coding downstream 297018 14344283 ~ 14346176 (+)
G10505 NA non-coding downstream 325235 14372500 ~ 14377042 (+)
G10528 smg1,LOC107564004 non-coding downstream 381689 14428954 ~ 14430878 (+)
G10597 NA non-coding downstream 660486 14707751 ~ 14708618 (+)
G10362 LOC108427334 other upstream 22507 14014352 ~ 14020095 (+)
G10200 LOC107747660 other upstream 907484 13134601 ~ 13135118 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other upstream 1220611 12774213 ~ 12821991 (+)
G10003 NA other upstream 1424405 12613691 ~ 12618197 (+)
arhgap17 LOC108432202,LOC108279379 other upstream 1442072 12527689 ~ 12600530 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other downstream 70347 14117612 ~ 14164106 (+)
LOC111193423 arl6ip1,LOC107658451 other downstream 267527 14314792 ~ 14398695 (+)
LOC103036470 NA other downstream 269142 14316407 ~ 14321860 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other downstream 314600 14361865 ~ 14371518 (+)
G10510 smg1,LOC107729485,LOC107583093 other downstream 357138 14404403 ~ 14407441 (+)

Expression


Co-expression Network