G10560


Basic Information

Item Value
gene id G10560
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14241061 ~ 14243794 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14251
tttcagacctcaaataatgcaaagaaaacaagatcatattcataaagttttaaaagttcagaaatcaatatttggtggaataaccttgttttttaatcacagtttttatgcatcttggcatgttctcctccaccagtcttacgcactgcttttggataactttatgccactcctggtgtaaaagttcaagcagttcagcttggttttatagCATGTAATCATCTgattcatcttcatcttgattatattacagagattttcaatttggtaaaatcaaggaaaaacatcatcattaagtggtctcttatttttttccagagctgtatatgcatatTGAGTCTTAATGTGCATGGGATAACAcaattcactaatacactactaTTAAATTACACATATTTATCTTATCAATATTTTACAGTCCTTAGACAGTgcagaaagtatttttttctcttattattatttttttaggatgtacactatacacactatattacacacacaaaactttTATTAATACATAAAGGACAAgcaaatacattatatttataatttagcaTCAGAACTGCATATACATATTAGAAGAATATCAGTGTATAGAAGTTGGTTATATAGTGATTCATAATTGCCACTTattagccaaaacattaaaacattaaacattaaaagtggacaaaacaaatcaaacagtgcTCCAAGAAATGACAACGTACAAGATTAATTCTAATAGAGGATCTACTGCTAATATTTTGATCTGTTGGTGCCCACAGCCGGCACTGACCAACGTTGTGCACTAGGCTCTAGTGGTGCCCTCACTGTGTTTATACAATCACACAGAGACTGCAGCttcatgttgtttaaatgttcttAATTTTAGGagcaaaaacagcattaaatattaaaaatagtattaaagaAACCAGTTAAATGAAATGAATTATAAATACaagtattattataatataaagtattggTAAATACAAGTATTGGTATTGGGGGATCCTCCACGGCTCCTGCTCAATACAcagaaattattatattattaaatactataggtctctctgagttgtatatgcatgctgccttaaaagacatttttcaaagcagctctgtttacaccagctagttaacGTTACGCTATCTTGTGTATGTAACTATAgttttaaatcggatctccggttgattcagatttttaccaagaccttaaagatacactagggaagcacagtttgacaaggcGTTTTGGGTGTGGGGTGGAAGAGTCGCTCGCCCGCAGGGAGagcattgataacatttctcAGCAACGCTAACAGTCTGATGTTAAGCGGAATTTAAGGGTTAACCTTACCTAGcgctcagtgctatatcttaagctgtatctctgaaaagtTTTTGCCCTTTGATTTTTTGAGAGCTGTataattgactgtggggggaggGCAGGTAGGCTtttttctgctgcagtgctgttagccaatcagaggcgatatgtttgcatgtatgaatattcatgagcaagagccaaaatcctgtccttcctcagagaccactaattaattgaaaaaaaatcaggactatacagaaacacagttttttactaaaaacggctcacatggcattcatttatactagagaccacaactagacattttaaaatcaatgaaaaaaagatggaatgagacctttaaaataatctaattatTGACAAAATAATTAtcatgcaatttaaaaaaaaagttgtgaaaGCAAAACATTAATGATATGATTGGCCTAGGATAGACGCACTGGCTTCATccacttaattaagctaaaaaaTGGTCTTGGCAGAATTGTCTGTTTTCTGATTGGCAGTGAAGTAAAGCTTATCCAAAGTCACCCCCATTTCCAGCAGCATGTTCTTTGGGACAGGACGGGCATGACGAGACACGTACACCTTTTCCAGATCATTATTCATAGGAGAGCCCACATAATCAGTGCAGGATGGGCCAGCAAGACTTGGAGCGCACACTACCTCTGTTTTGTAGTACAGCAGACCATGGTTCAGTGAACAGAAATTCTGCGTCTGGCCTGCTTTTATGTCTACTGAGCATGCTCCCAGAAGATCATCGTCCCATTTGTTGTCTTCGTCCCACACCTCAAACCTTACAGAGTCAGGACTCGTCAGGACGACATCGCCCAGGTCGAACGCCATGCCCCAGTGTGGCGAATCGTTGTTGTAGATCACGGGAGTGCGTCCGATCGACATCATGTTTTTATCGAAGACTTTCACAAATGCGTCTGTTGCTGTGGTGGTGTCTCCCCACAGGCCAGACGCTCTTTCAACAGTCACTATCACTCTAGCGAGTCCGCGTTTGGACGGGCAGCAGTCAGGAGTCATCCCGGGGTTGTTTCGGCAGCTGCAACTGCAAGGCTCCTTGGGGTTCTGCTTGATGCCCATCATGCAGGGCTCTGAGCAGTTTCTCCACAGGGACTTCTCCAGGATGAAGTCATGGATGGCTTGGCGAAGATGCTTTCGGGCTGGGTTCTTGGTGGGCAGCAGCTCATGCAGAGGCTCTAGGGAATAGGAGATGATGTCTGGGTTGAGGGGAAGGGAGGAAAGCCAGTCCTTATAGGCCCCTGGGTCTTTATTAGCAGAGAAGAGGAGCTCAGGCTCTGTGGTGTGACCACCTAAGACCTCTGTGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14251 True 2681 TUCP 0.40 2 14241061 14243794

Neighbor

gene id symbol gene type direction distance location
LOC103035550 paqr4,paqr4a,LOC105897660,LOC106601588 coding downstream 43821 14166440 ~ 14197240 (-)
LOC103035240 LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063 coding downstream 92779 14117591 ~ 14148282 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding downstream 276223 13683879 ~ 13964838 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding downstream 569379 13631779 ~ 13671682 (-)
syt3 syt3,LOC107551154,LOC107563990 coding downstream 700136 13424026 ~ 13540925 (-)
LOC103039514 LOC108427305 coding upstream 4880 14248674 ~ 14292162 (-)
LOC111193418 NA coding upstream 87208 14331002 ~ 14333447 (-)
armc5 armc5 coding upstream 98126 14341920 ~ 14350288 (-)
LOC103037078 LOC103037078,LOC108427313 coding upstream 110558 14354352 ~ 14360091 (-)
LOC103036770 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 coding upstream 117840 14361634 ~ 14371508 (-)
G10430 NA non-coding downstream 219172 14021687 ~ 14021889 (-)
G10429 NA non-coding downstream 230648 14010176 ~ 14010413 (-)
G10413 NA non-coding downstream 323223 13917124 ~ 13917838 (-)
G10379 NA non-coding downstream 565768 13673955 ~ 13675293 (-)
G10303 NA non-coding downstream 655142 13585450 ~ 13585919 (-)
G10561 NA non-coding upstream 62478 14306272 ~ 14306530 (-)
G10595 NA non-coding upstream 448988 14692782 ~ 14694894 (-)
G10649 NA non-coding upstream 463539 14707333 ~ 14708613 (-)
G10654 NA non-coding upstream 527536 14771330 ~ 14771618 (-)
G10782 polr3d non-coding upstream 775497 15019291 ~ 15020115 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 157954 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 948183 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1423875 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 2562953 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 2896799 11340140 ~ 11344262 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 375582 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 544276 14788070 ~ 14797643 (-)
G10767 NA other upstream 679171 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 717038 14960832 ~ 14981569 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 1028961 15272755 ~ 15278437 (-)

Expression


Co-expression Network