G207692


Basic Information

Item Value
gene id G207692
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24443276 ~ 24496664 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU281861
TTCATATAAAGACTTTATTGTACATACTGAGCcataatatacacatattttGTAAACTACAATACATCAAATTTTCATCAGAGCATAGTCGACCAAACTTTCAGTAAatttacacactaaaataaatcCACAGCAATCAGTAAGTCAACACTCAATACTGCATGTAGACCATACTTGATTTGAACATGCACAAAATTTCcaaatgaacataatattaaaatattttttatgaacaTATTTCTATGTACTccagttgtttttttccagttgtCATATCTGTCAGTCATAACATTAAATCCATCGATCTAATACTGTGTAGGTCCCCTATGCACTAGAGGTAtcaagtaacaaagtacaaatactttgttaccttacttatGTAGAAattttgtatctattttttactaattatttttcagatggccttttacttctactttttacattttcacacaattatctgaactgaatactctttacattttaaaaatagccgtgttactcctatttcatttcagcttgttttcattccagcttctcatcgttcaataaaaccccctatccagataaatctctccatccagatagagtgaatctgattgtgattggatgtagagaagtataaacatataccattccgacaccctattggtttatactgtgatccatcacacctgcacatgtcactcccacactccagcaagaacatagcagaggtatgtagcctagtatgaagatgatccgtgcagagactcaagagaactccagataaactccagtccaactaagctttaactttaatatatttacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281861 True 812 lncRNA 0.33 2 24443276 24496664

Neighbor

gene id symbol gene type direction distance location
LOC103032449 LOC108412069,LOC108268535 coding downstream 26845 24410828 ~ 24416431 (-)
mpped2 mpped2,LOC108269255,LOC108415426,LOC107572223,LOC107589164,LOC108415121 coding downstream 229617 24172289 ~ 24213659 (-)
tcp11l1 tcp11l1 coding downstream 777396 23657234 ~ 23665880 (-)
LOC103046977 LOC108410746 coding downstream 788173 23612063 ~ 23655103 (-)
LOC103047696 kiaa1549l coding downstream 840931 23506008 ~ 23602345 (-)
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding upstream 11573 24508237 ~ 24514730 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding upstream 35984 24532648 ~ 24746996 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 260567 24757231 ~ 24774151 (-)
LOC111195752 LOC108428077 coding upstream 282749 24779413 ~ 24788023 (-)
LOC103044011 NA coding upstream 316666 24813330 ~ 24830963 (-)
G207639 NA non-coding downstream 242844 24197461 ~ 24200432 (-)
G207623 NA non-coding downstream 462925 23979709 ~ 23980351 (-)
G207618 NA non-coding downstream 469712 23973284 ~ 23973564 (-)
G207617 NA non-coding downstream 470487 23971795 ~ 23972789 (-)
G207616 NA non-coding downstream 472329 23970317 ~ 23970947 (-)
G207702 LOC108411915 non-coding upstream 9485 24506149 ~ 24507943 (-)
G207705 coq9,LOC107707431,LOC107099699,LOC107589199 non-coding upstream 20799 24517463 ~ 24520749 (-)
G207706 NA non-coding upstream 34061 24530725 ~ 24577606 (-)
G207763 NA non-coding upstream 315990 24812654 ~ 24812952 (-)
G207767 NA non-coding upstream 395069 24891733 ~ 24892263 (-)
dnajc24 dnajc24 other downstream 422962 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1030322 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 1487252 22885432 ~ 22956024 (-)
LOC103034681 LOC108436714 other downstream 2196163 21764104 ~ 22247113 (-)
G207707 polr2c other upstream 28070 24524734 ~ 24529067 (-)
G207772 NA other upstream 451467 24948131 ~ 24948851 (-)
usb1 NA other upstream 754571 25251235 ~ 25260167 (-)
G207903 NA other upstream 820338 25317002 ~ 25352674 (-)
G207940 NA other upstream 1095967 25592631 ~ 25733304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G359630 NA non-coding CI01000152 null 2914009 ~ 2916458 (+)
eurasian perch (Perca fluviatilis) bean1 bean1,LOC102779979 misc NC_053130.1 CM020927.1 8066336 ~ 8119063 (+)