LOC103044011


Basic Information

Item Value
gene id LOC103044011
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24813330 ~ 24830963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683859.1
GCAGCTAGTCGCCcaacagcggcagcagcagtagcTGAGCGAGGTGAAAATAGTGAGAATAACACAGCGAGGCTAGGTTGAGGTATGAGGGCTACTCGGAAAAAGAGATCTGCCAAGAAGAAAGACGGCAGGACCAGCAAAGCTGAGAAAAAAAGGCTacagaaagaggaagaggagcggaggaggaaggaggaagAGGAGGCTCTTCTCATCGCTGAGCAGGAGAGGctggagagagagcagagagaagaagaggaaagaCAGAGGCATGAGTTAAAGGAGAGAGAACGCAGGGAGGATGAGCTTAATGAACTGCATTTTAAACTGGAGGAGAACCAGTCTGCAGTTAACACATGGGAGGCTGCATCCAGGGAGAAAGCTGAGTGGGATCGGTACATGCTTTGTGATGGTACTCCAAACCCTGCTGTGCAACCGGAGGTCAATACCTTTATCAGTCTGTGGCAAGATGACCCAGAGCTGCAAATCCAGCCAATCATGCAACAATGTGCTTTGGCTCTGCGGTTAACAGATGAATTGGACCTGTTACTGAACCCTGAGCTTGAGCCCGCTGTGAATCAGGTCTATTACAGCACTATCCTCTCTCTCCAGAACCTCATCCATAAAAAATACCTGCTCGCCACTGAGGAGATACTGAATgGGGCTAAAGCTTGTgtagacaatgaaactggaaACATGCAGACAGTAGTGCAAGACGACAACATCACTCTGTGCTTGTGGGCCAACCTCAACAAAAAACCCAGGTTTAAAGGCTACCACTTTACGGATGTGGGGCTCGGCTTTGAGCTTCCCAGGCAGCTGGCCATGAGTGATATCGCTGTGCGGATCCTGCACACCAACTACGACCACCTGTCTCACCTGAGCCACCGAGCTCAAGAGGAGAAGAGGAAACTCGAAAAGGAGGAAGCGGAGAACACAGAGACCATGATCACCCGGCCTGAGACCCCCAGAGCTCTAGAGGATGGAGAGATGAAGGGCGAGGAGAACGGGAGGTCAAGTGCAGAGCAAGCAGACGAGGAGATCCAGTCACTTAAATCTGAAAGGAAGGagAGCGCTGCCAGTGTTCACTCTGctaagaaggagagaaagagctcTTCACAAAGACAGAAGGAGGAGGGAGAAGGTCAGATCGAGATCGAGACCATAGTGGAAGGTGTCTCGACTTCTGCAGGAGAAACAGATGAGGCCGACTCCGCCCCCACAGTAGCCGTGCCAGTGACTGACAGCAGGGAGGAGCATGTAGTGGATCTGCAGAAGTACACGTCCCTGGGCGGAGTCTTCTACTTTGAGGTGTTCCACTTACCTCCACAGTCTTATACAGCCAGAGGCTGGGAGATCAGACAGTTGCTGGATACAGGACTCCAGGTGTTTCCATACCAATCAGAACCTGCTCAGGTGCACAGTGCTGTTTCAGGGAAGCAGGATGAGAACAGTACACAGTCTGGAGCTGTAGGGGTCACTGTAGTCCTGCCTGATTCTGTGATCTTCCTGAAAGAACCACAGGTGGCCCGCTGGGACCCTATTGGGCAGCACTGGAGAACAGACTGCATCATGGACACATCATACAGTGCTGAGACTCGCAGCGTCTCCTTCAGGATGGAGTCTTTCTCTTCCTTCACTCTGCTTCAGGAGATATATGCAAATATGCCATTCCAGTCTTGGGAGCTGAGGCCACTGTGCCAGGATTCAGTGCTGTTTACCCTCAACACAGCTCTCACTGAACTCAGCATCACTGTCAAGGGGAACCAGTGTATGCTGCAGATGAAGGAGGCTCGTGAACTGGCTCATATTCTGGGCAAATGGATGAGCCTGACTGCTCTACAAACAGCCATGAGGCGAGCTGGAGTCAACATATTTGTTAATGAGTACTCGGACAAGTATGTCACTGTCAACAAAAAGgaTCCTCTGATTGAGCATGCAGTGTATGAGCAGATGGCATTGGTGTCCTCAACTTATGCTTTCTCCTGGAGTCAGTGGAACACACAGTGTGGGCAGGAGCATCTTGTCCTTCAGGTCTGTGAACAGTTAGCAGCATCACCTGTACCTGAGGAGGCGTGGTCTCTGTATCTGCTGGGAGCTCAGAGGAGTCAGCGATTAAATATTTCAGAAAGAAGTGAAGCTTTTTCTCTGGATCTGGCCGAGGGGACGGAGTTTCACTTCACTTTACTGCACATGCTGAGAGACAGCATGAGCCCCGAGGGCCGGGCCAGAATCGACCACTCCCACTTCCTGTACACCGACACCGTGCAGAAACTGCTATCAGCCACCCGGGTGCTCACTTTCACACGAAGAGATGTTTACACTGCAGATAACTAGTCCTAAGCCATGAAAATCTCTCATTTTAATGcaataaatagatttttaaatcagtttttaaatctgagaaactaatgtttgggttttcattagc

Function

GO: NA

KEGG:

id description
K17580 CASC1; cancer susceptibility candidate protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683859.1 True 2428 mRNA 0.50 16 24813330 24830963

Neighbor

gene id symbol gene type direction distance location
LOC111195752 LOC108428077 coding downstream 25307 24779413 ~ 24788023 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 39179 24757231 ~ 24774151 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding downstream 66334 24532648 ~ 24746996 (-)
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding downstream 298600 24508237 ~ 24514730 (-)
LOC103032449 LOC108412069,LOC108268535 coding downstream 396899 24410828 ~ 24416431 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding upstream 73607 24904570 ~ 24910773 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding upstream 313028 25143991 ~ 25150989 (-)
drc7 NA coding upstream 381602 25212565 ~ 25231011 (-)
ccdc113 NA coding upstream 439178 25270141 ~ 25277760 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 581223 25412186 ~ 25452091 (-)
G207763 NA non-coding downstream 378 24812654 ~ 24812952 (-)
G207706 NA non-coding downstream 235724 24530725 ~ 24577606 (-)
G207705 coq9,LOC107707431,LOC107099699,LOC107589199 non-coding downstream 292581 24517463 ~ 24520749 (-)
G207702 LOC108411915 non-coding downstream 305387 24506149 ~ 24507943 (-)
G207692 NA non-coding downstream 316666 24443276 ~ 24496664 (-)
G207767 NA non-coding upstream 60770 24891733 ~ 24892263 (-)
G207768 NA non-coding upstream 66339 24897302 ~ 24946528 (-)
G207781 NA non-coding upstream 131609 24962572 ~ 25045617 (-)
G207881 ckap5,LOC108269026 non-coding upstream 322665 25153628 ~ 25166678 (-)
G207874 ckap5,LOC108269026 non-coding upstream 360274 25191237 ~ 25193673 (-)
G207707 polr2c other downstream 284263 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 793016 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1400376 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 1857306 22885432 ~ 22956024 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 2830600 21979799 ~ 21982730 (-)
G207772 NA other upstream 117168 24948131 ~ 24948851 (-)
usb1 NA other upstream 420272 25251235 ~ 25260167 (-)
G207903 NA other upstream 486039 25317002 ~ 25352674 (-)
G207940 NA other upstream 761668 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 1088257 25919220 ~ 25938032 (-)

Expression


Co-expression Network