G207874 (ckap5,LOC108269026)


Basic Information

Item Value
gene id G207874
gene name ckap5,LOC108269026
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25191237 ~ 25193673 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282131
tccTGCACTGTTCCGTTGAGGTAGACTTGAGTTGAAGGCAAATAAACCTTGCTAAGCTTATATCTGGCTACCATACGTTAACTTGGTTCAGTAGTTAACCTGAAAGCAAGCTGGCTTGGCTTCGTATTCCAGCAATGAAGAGAAGAGAGTTTGGAAAGACAGTATGTCAAACATGTGAAGAAGACATTAGTAGCACACAAGAAACACATTCATTTTATGCTTCATTATCTGATTCAATGAATCTGATCGCCAAACAtaaattgtacttttactttatttttctaactgctgcttcTAGAGCACTGAGCGACAGTGGAACGTACTTGAGTTTGTTGGGCACATCCTCCTGAGCAGGCTTCCGGAGGAACGTTGCGTTGGGATTGGTCGGATGCTCTCTCTGAGCTTTTTCTTGTTTGGTTGAGACAGCAGGCGTCTTTTTAGCTGAGCGTTTGATTCGCTCTTCTAACATGCTCATGTCTTTCTCTGATAGGTTGCCGATGAGTTTGAAGACCTGGTCTCCGCAGACATTGTACGCTGCCACCACCGTGTTGAGAGCAGCATTTCGCACCGTTGTGTCACGATCACCAATGTGAACGGCAATGTCTTTAAGAGCTTTAGCTGGAGTCGGCTGACACACGTTCATTCCATAGTTCTCAATCAGGCACCCAAGTTCTTCAAGACATTCACATCTCTGCTTTGAATTCTTGGACTTCGTCCCCTCCATGAGAAATGGAAACATTTTGTTGGCAGAATAGACATTACACAGCATGGTCAGGATGGCCCGGACATCTTTACGAACCACATCTTTTGATTCTCCAACCTTGAGGATCAGGTAGGGGATGAAAGAGGAAGCCTCGTATTCGCTGAGGTGGTAGTTCTCTCTGCTCAGCATGGTGAAGAGGAGTTTGAGGAACTCCATGGCCTTAATCAGAATACTGGTGTTCGTATCAAAGAACCGAAGTGTGAACCACTTCAGAATTAAGTCTAGACAGCCAAGCACAGCCTCTGCCTCAGCCTCCATGTGCT

Function

symbol description
ckap5 Predicted to enable microtubule binding activity and microtubule plus end polymerase. Predicted to be involved in microtubule cytoskeleton organization. Predicted to be located in chromosome, centromeric region and cytoplasm. Predicted to be active in centrosome; kinetochore; and spindle pole. Predicted to colocalize with microtubule plus-end. Orthologous to human CKAP5 (cytoskeleton associated protein 5).

NR:

description
PREDICTED: cytoskeleton-associated protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282131 True 1026 lncRNA 0.45 4 25191237 25193673

Neighbor

gene id symbol gene type direction distance location
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 40248 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 280464 24904570 ~ 24910773 (-)
LOC103044011 NA coding downstream 360274 24813330 ~ 24830963 (-)
LOC111195752 LOC108428077 coding downstream 403214 24779413 ~ 24788023 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 417086 24757231 ~ 24774151 (-)
drc7 NA coding upstream 18892 25212565 ~ 25231011 (-)
ccdc113 NA coding upstream 76468 25270141 ~ 25277760 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 218513 25412186 ~ 25452091 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 302628 25496301 ~ 25572271 (-)
LOC103040521 NA coding upstream 487557 25681230 ~ 25685611 (-)
G207881 ckap5,LOC108269026 non-coding downstream 24559 25153628 ~ 25166678 (-)
G207781 NA non-coding downstream 145620 24962572 ~ 25045617 (-)
G207768 NA non-coding downstream 244709 24897302 ~ 24946528 (-)
G207767 NA non-coding downstream 298974 24891733 ~ 24892263 (-)
G207763 NA non-coding downstream 378285 24812654 ~ 24812952 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding upstream 85692 25279365 ~ 25299692 (-)
G207926 NA non-coding upstream 236331 25430004 ~ 25430323 (-)
G207928 NA non-coding upstream 244376 25438049 ~ 25442155 (-)
G207934 NA non-coding upstream 270868 25464541 ~ 25467095 (-)
G207938 NA non-coding upstream 360574 25554247 ~ 25557367 (-)
G207772 NA other downstream 242386 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 662170 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1170923 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1778283 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 2235213 22885432 ~ 22956024 (-)
usb1 NA other upstream 57562 25251235 ~ 25260167 (-)
G207903 NA other upstream 123329 25317002 ~ 25352674 (-)
G207940 NA other upstream 398958 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 725547 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 795765 25989438 ~ 25992494 (-)

Expression


Co-expression Network