LOC103042358 (chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940)


Basic Information

Item Value
gene id LOC103042358
gene name chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24904570 ~ 24910773 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683861.1
ctctctctctctctctcacttccaaCCATCTATACTTCCATTCGCCGACTGAAGGCGCCTGTTCTGCGCGCGTGCACTCAGAGATCAAAGCTGGTGGAGAGAAGGCGCGAGAGAAGACGCTCCGTTTCTGCGCCTTTAGAacaattctatatattttatcatcattttcacatcaTTTTACCtgtttatctcctcgtgctcggTTCCCTGGCTTCGATCTCTTCTCTACACCTGTGGGCTGACTCTCTCTGACGGACAGACGCGTTTCTTCAATCTGAAATAAAAGAAGGTGAAGCGGAATCTGTTCTTCTATCCCTCTTTTACATCCTTCTCCTCGTGCCTCCGCGTGATGGTAACTCGCGCGGACAGACCTGTGCGCGTGCCCGGGGCTTGAAGGAGCAGCTGGTTCTGCGCTCGATCCGCAGCCGCGCGCAGCTTAATCAACAAGCTGTCCCTTCGCCGATGGGCATCAAATCAGCCCGCATCATCTAAATGAAGTTACTCAGCCATGCAATGTTCCTGGAAGGCTGTGATTCTGCTCGGCTTGGCGTCGATCGCCATCCAGTACACAGCGATCAGGACGTTCACCGGAAAAACATTCCAGATTTGCCCCTTGACCAGCCCTCTGAACTGCAGCCTGGGGTCGGACGGGGAGGCTTTTGGGGGCTTGTGTGACGAGTTCCCTTATTTCTTTTACAACAACTCCAGAAAGACCCATGTCCTCATCCTGGCCACCACTCGCAGCGGCTCCTCTTTCGTGGGGCAGCTTTTCAACCAGCACTCAGACGTCTTCTACCTGTTTGAGCCGCTTTATCACGTCCAGACCACCCTGATCCCTCACTACACGCACAGCCGGAACACAGCCGACCGCAGGGTGATGCTCGGGGCCAGCCGAGACCTCCTGCGGAGCTTGTACGACTGCGACCTCTATTTCCTAGAAAGCTATTTCAAGCCTCAGCCTGCGAACCACACCACGGACAAGCTCTTCCGCCGAGGGGCCAGCAGAGCACTGTGCTCCCCACCAGTCTGCGATGCGTTCAGCCCCAGCGAGCCGTACATAGACGAGGGCGAATGCATCCGGAAATGCAGCTCCCTTAACCTGAGCCTTGCGGTCGAGTCGTGCCGGGAGAGACGCCACGTGGCCATTAAAACCGTGCGGATTCCGGAGATTGCAGACCTCAGAGCGCTCATCGAGGACCCTCGTCTAAACCTCAAAGTCGTCCACCTGGTAAGGGACCCTCGAGGTATACTTTCGTCAAGGATCGAGACATTTCGAGACACCTACCGCCTCTGGAGGATATGGAGGGCCACTGGACGGAAACCCTACAACCTAGACCTCACCCAGCTCAGCACTGTGTGTGAGGACATGCTACGGTCCACAACCACCGGCTCCAGTCGCCCCCTCTGGCTTAGGGGCAGGTACATACTGGTGAGGTACGAGGATCTGGCCCGGAACCCGCTCCAAAAGACTACAGAGATTTACGACTTCCTGGGTCTGCCCATGGAGAAAAGTGTGGAGGAGTGGATCCGGAACAACACAAGAGGCAGCAACGACATCTCGGCCAAGCACAAGTACGGCACGGTCAGGGACTCGGCCGCCAACGCAGAGAGCTGGAGGCTCAAACTGTCTCATGAAATCGttgaacacacacagacagtctgCCAGCAGGTTCTCGAGGAGCTGGGATACAAACCGGTCAACTCGCCGGAGGAGCTCAAGAACATGTCCGTCTCGGTCATCGAGGACAAAACCTTTGTACCTTTTTTGTAAGCGGAAAAATTGcacaagtatttttttaaatttctactGTTGCCTTAATCCTTAAAATCGACTCATTCTGAACATATTTGCACTAAGAACTTTGTAAAGCTCGGAAGTTCGCTCGCGGTCTCGATGAACAGCACaacaacatcatcatcaacaaaaacaacaacaaccaaccaaccaaaccaaaacccaGAGTGGAAGAGATCTTAGCTTCAGCTCAAATGCAGTAAACATCATCAGAATCAGAACCACAGCCCTTGTTCACAAATGTTTAGTTTAAGTATATTAAGAATTGATCACTATCTGGGTAATCAGTTCCTGTATCCTGTTTCCTTGATAAAGGTGAAAAGAGTTCTGTGGGTGAAGGACCAAAACTATTTTCCAGAAACTGCAAACATTTGCTAAAATAAGAGATCTGAAACGGTGACACCATGCAATAAACTTGTGAATGTTGCAGAGAGTCTTGAA
>XM_022683862.1
ctctctctctctctctcacttccaaCCATCTATACTTCCATTCGCCGACTGAAGGCGCCTGTTCTGCGCGCGTGCACTCAGAGATCAAAGCTGGTGGAGAGAAGGCGCGAGAGAAGACGCTCCGTTTCTGCGCCTTTAGAacaattctatatattttatcatcattttcacatcaTTTTACCtgtttatctcctcgtgctcggTTCCCTGGCTTCGATCTCTTCTCTACACCTGTGGGCTGACTCTCTCTGACGGACAGACGCGTTTCTTCAATCTGAAATAAAAGAAGCTGTCCCTTCGCCGATGGGCATCAAATCAGCCCGCATCATCTAAATGAAGTTACTCAGCCATGCAATGTTCCTGGAAGGCTGTGATTCTGCTCGGCTTGGCGTCGATCGCCATCCAGTACACAGCGATCAGGACGTTCACCGGAAAAACATTCCAGATTTGCCCCTTGACCAGCCCTCTGAACTGCAGCCTGGGGTCGGACGGGGAGGCTTTTGGGGGCTTGTGTGACGAGTTCCCTTATTTCTTTTACAACAACTCCAGAAAGACCCATGTCCTCATCCTGGCCACCACTCGCAGCGGCTCCTCTTTCGTGGGGCAGCTTTTCAACCAGCACTCAGACGTCTTCTACCTGTTTGAGCCGCTTTATCACGTCCAGACCACCCTGATCCCTCACTACACGCACAGCCGGAACACAGCCGACCGCAGGGTGATGCTCGGGGCCAGCCGAGACCTCCTGCGGAGCTTGTACGACTGCGACCTCTATTTCCTAGAAAGCTATTTCAAGCCTCAGCCTGCGAACCACACCACGGACAAGCTCTTCCGCCGAGGGGCCAGCAGAGCACTGTGCTCCCCACCAGTCTGCGATGCGTTCAGCCCCAGCGAGCCGTACATAGACGAGGGCGAATGCATCCGGAAATGCAGCTCCCTTAACCTGAGCCTTGCGGTCGAGTCGTGCCGGGAGAGACGCCACGTGGCCATTAAAACCGTGCGGATTCCGGAGATTGCAGACCTCAGAGCGCTCATCGAGGACCCTCGTCTAAACCTCAAAGTCGTCCACCTGGTAAGGGACCCTCGAGGTATACTTTCGTCAAGGATCGAGACATTTCGAGACACCTACCGCCTCTGGAGGATATGGAGGGCCACTGGACGGAAACCCTACAACCTAGACCTCACCCAGCTCAGCACTGTGTGTGAGGACATGCTACGGTCCACAACCACCGGCTCCAGTCGCCCCCTCTGGCTTAGGGGCAGGTACATACTGGTGAGGTACGAGGATCTGGCCCGGAACCCGCTCCAAAAGACTACAGAGATTTACGACTTCCTGGGTCTGCCCATGGAGAAAAGTGTGGAGGAGTGGATCCGGAACAACACAAGAGGCAGCAACGACATCTCGGCCAAGCACAAGTACGGCACGGTCAGGGACTCGGCCGCCAACGCAGAGAGCTGGAGGCTCAAACTGTCTCATGAAATCGttgaacacacacagacagtctgCCAGCAGGTTCTCGAGGAGCTGGGATACAAACCGGTCAACTCGCCGGAGGAGCTCAAGAACATGTCCGTCTCGGTCATCGAGGACAAAACCTTTGTACCTTTTTTGTAAGCGGAAAAATTGcacaagtatttttttaaatttctactGTTGCCTTAATCCTTAAAATCGACTCATTCTGAACATATTTGCACTAAGAACTTTGTAAAGCTCGGAAGTTCGCTCGCGGTCTCGATGAACAGCACaacaacatcatcatcaacaaaaacaacaacaaccaaccaaccaaaccaaaacccaGAGTGGAAGAGATCTTAGCTTCAGCTCAAATGCAGTAAACATCATCAGAATCAGAACCACAGCCCTTGTTCACAAATGTTTAGTTTAAGTATATTAAGAATTGATCACTATCTGGGTAATCAGTTCCTGTATCCTGTTTCCTTGATAAAGGTGAAAAGAGTTCTGTGGGTGAAGGACCAAAACTATTTTCCAGAAACTGCAAACATTTGCTAAAATAAGAGATCTGAAACGGTGACACCATGCAATAAACTTGTGAATGTTGCAGAGAGTCTTGAA

Function

symbol description
chst1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and keratan sulfate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; otic placode; retina; and retinal inner nuclear layer. Orthologous to human CHST1 (carbohydrate sulfotransferase 1).

NR:

description
PREDICTED: carbohydrate sulfotransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045130 keratan sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683861.1 True 2236 mRNA 0.52 2 24904570 24910773
XM_022683862.1 False 2077 mRNA 0.51 2 24904570 24910773

Neighbor

gene id symbol gene type direction distance location
LOC103044011 NA coding downstream 73607 24813330 ~ 24830963 (-)
LOC111195752 LOC108428077 coding downstream 116547 24779413 ~ 24788023 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 130419 24757231 ~ 24774151 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding downstream 157574 24532648 ~ 24746996 (-)
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding downstream 389840 24508237 ~ 24514730 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding upstream 233218 25143991 ~ 25150989 (-)
drc7 NA coding upstream 301792 25212565 ~ 25231011 (-)
ccdc113 NA coding upstream 359368 25270141 ~ 25277760 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 501413 25412186 ~ 25452091 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 585528 25496301 ~ 25572271 (-)
G207767 NA non-coding downstream 12307 24891733 ~ 24892263 (-)
G207763 NA non-coding downstream 91618 24812654 ~ 24812952 (-)
G207706 NA non-coding downstream 326964 24530725 ~ 24577606 (-)
G207705 coq9,LOC107707431,LOC107099699,LOC107589199 non-coding downstream 383821 24517463 ~ 24520749 (-)
G207702 LOC108411915 non-coding downstream 396627 24506149 ~ 24507943 (-)
G207781 NA non-coding upstream 51799 24962572 ~ 25045617 (-)
G207881 ckap5,LOC108269026 non-coding upstream 242855 25153628 ~ 25166678 (-)
G207874 ckap5,LOC108269026 non-coding upstream 280464 25191237 ~ 25193673 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding upstream 368592 25279365 ~ 25299692 (-)
G207926 NA non-coding upstream 519231 25430004 ~ 25430323 (-)
G207707 polr2c other downstream 375503 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 884256 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1491616 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 1948546 22885432 ~ 22956024 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 2921840 21979799 ~ 21982730 (-)
G207772 NA other upstream 37358 24948131 ~ 24948851 (-)
usb1 NA other upstream 340462 25251235 ~ 25260167 (-)
G207903 NA other upstream 406229 25317002 ~ 25352674 (-)
G207940 NA other upstream 681858 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 1008447 25919220 ~ 25938032 (-)

Expression


Co-expression Network