G207781


Basic Information

Item Value
gene id G207781
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 24962572 ~ 25045617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU281991
gtcggtctttgcactgtctcccGTTGTCTGTCCTTCTGCGTTTCTCTGATCTCAGTGTTTCCATAGCCTTAACCCGAGTcccttgttctgtgtttatctctgtttattttctagttccctgtttagttttctagtttattcccttgccctgtttaagttcatcctgtctagttttatagcctctgtttcttgtttttctttgtttcttgtttacttgtttatttgtttatatttatttaataaattcgccctacctgtgtttacgtccgcctcctcgtctctctgcctgggtcaacccctgacaaAAAGACCGA
>TU281993
gtcggtctttgcactgtctcccGTTGTCTGTCCTTCTGCGTTTCTCTGATCTCAGTGTTTCCATAGCCTTAACCCGAGTcccttgttctgtgtttatctctgtttattttctagttccctgtttagttttctagtttattcccttgccctgtttaagttcatcctgtctagttttatagcctctgtttcttgtttttctttgtttcttgtttacttgtttatttgtttatatttatttaataaattcgccctacctgtgtttacgtccgcctcctcgtctctctgcctgggtcaaccctgacaGgtagagtcacctggaattcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281991 False 314 lncRNA 0.41 2 25031099 25045617
TU281993 True 325 lncRNA 0.41 2 24962572 25045617

Neighbor

gene id symbol gene type direction distance location
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 51799 24904570 ~ 24910773 (-)
LOC103044011 NA coding downstream 131609 24813330 ~ 24830963 (-)
LOC111195752 LOC108428077 coding downstream 174549 24779413 ~ 24788023 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 188421 24757231 ~ 24774151 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding downstream 215576 24532648 ~ 24746996 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding upstream 98374 25143991 ~ 25150989 (-)
drc7 NA coding upstream 166948 25212565 ~ 25231011 (-)
ccdc113 NA coding upstream 224524 25270141 ~ 25277760 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 366569 25412186 ~ 25452091 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 450684 25496301 ~ 25572271 (-)
G207768 NA non-coding downstream 16044 24897302 ~ 24946528 (-)
G207767 NA non-coding downstream 70309 24891733 ~ 24892263 (-)
G207763 NA non-coding downstream 149620 24812654 ~ 24812952 (-)
G207706 NA non-coding downstream 384966 24530725 ~ 24577606 (-)
G207705 coq9,LOC107707431,LOC107099699,LOC107589199 non-coding downstream 441823 24517463 ~ 24520749 (-)
G207881 ckap5,LOC108269026 non-coding upstream 108011 25153628 ~ 25166678 (-)
G207874 ckap5,LOC108269026 non-coding upstream 145620 25191237 ~ 25193673 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding upstream 233748 25279365 ~ 25299692 (-)
G207926 NA non-coding upstream 384387 25430004 ~ 25430323 (-)
G207928 NA non-coding upstream 392432 25438049 ~ 25442155 (-)
G207772 NA other downstream 13721 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 433505 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 942258 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1549618 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 2006548 22885432 ~ 22956024 (-)
usb1 NA other upstream 205618 25251235 ~ 25260167 (-)
G207903 NA other upstream 271385 25317002 ~ 25352674 (-)
G207940 NA other upstream 547014 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 873603 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 943821 25989438 ~ 25992494 (-)

Expression


Co-expression Network