tcp11l1 (tcp11l1)


Basic Information

Item Value
gene id tcp11l1
gene name tcp11l1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 23657234 ~ 23665880 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228321.3
TGTTACTTCCGTAAATAGACGCAGACTAGTTGTGTATCAGATTCATCGAGAAGCCAGAGACAGAGCGGTGGACAGGCGAGAGTTCTTTAAATATTATCCGACAAGTGGCTCCCACAGACCCCCCAGAGCTGACCTCTTTATCCAGTCCACCGGTGGTCATAACTGGTTTGTGGAGGATGCCCAAGGAATCCAATGAATCATCCAGTGAGGCGAACAAGAAGATGGACAGTAAAGGGCCAGatgactccacagagcagacAGAGGCATCGGAAGAGATGCTGCGTAAGAGGATTAGAACAAATACACCAAGCCCTCACCGACTGACTCCACAGTCTAGCCCACCCAAGTTTGTGTCTATGGAAGAGCTAATGGAGACTGCTAAAGGAGTGACTAACATGGCATTGGCTCATGAGATTGTGGTGAATGGTGGCTTTCAGGTTAAACCCACTGAGCCTGCTGAAggaagCTTAGAGAAACGTGTTAAGGAAATCATGCACAAGGTATTCTGGGATTCTCTTGAGGCACAGCTGAATGAGGACCCCCCTGTCTTTGACCACGCCATCCAACTGGTTGGGGAAATTAAGGAGACCCTGCTGATGTTCCTGAGGCCGGGGCAAACTCGGTTGAAGGGGCAGATTGAGGAAGCACTGGACCTGTCCCTCATCCAGCAGCAGGCTGAGAACGGAGCGCTGGACATCAGCAAGGTGGCTCAGTTCATCATCAGCATGATGGGAGCTTTCTGCGCACCTTGCAGAGACGAAGACGTCCGAAAGCTTCGGGACATCACTGACATTGTGCCCCTTTTTAAGGCTATTTTCGCAGTTCTGGACAAGATGAAAATTGACATGGCCAACTTCGCCATCACTAGTCTCCGTCCTCACCTCCTGCAGCAGTCAGTGGAGTATGAGAGGCAGAAGTTTCAAGATTTTCTGGACAAACAGCCCAatGCTTTAGACTTCACTCTGAAATGGCTCCAGGAAACTGCAGACTCGCTCAAAGAAAGTCAGGGAGGAGCAGCAAGTGATTCTAGTTCTTCCTCTCAGCTGGCGCTCAGCGTGCATAATCAGGCCTATTTACGGCTGCTCAACTGGGACCGTAGCACAGACTCCTTCCCTGAGACTGCTCTGATGGACAGGGGCAGGTTTCTGGAGATGCAGCTGGAGCTTGAGCGCCTGGTGCTGGTGGCGGCTGTGCTTCTCATTGTGTATAACAGTGCGGGAGAGGCCATCTCTGGCCTGCCAGGCCTCATGGACAGGCTTAAGAATACCATGAAAATCCTGCTTGCAGAGATGCACACCCCGTCATTCAAACTGGATGAAGCATTCTCTTCAATTGGAGAGAAGCTGTGTTTGGAGCTAGGAGAATGCCTGTCTCAGCATGGATTCTCACCCTTCCACACGGACAGACAGAGTGCCCTCAAAGGCCAAGTAGCAGCTGTCCAGTCTGCAGACAACCCCATCCGTAAACTCATCGATTCTCGGATTCAGGCCTATCTCCTGTGCTTCCTGGAGTCAAGCCAACATAAGACCCCCCCAACAATTCCTGGAGGTCTGGCACCTGTCAGTAAAGAGCTGGAGGAGCTTGGCGTCAAACTGAGCCGCTTGGTTAACTTCAACAAGCTTGTCTTTTCTCCGTTCTACCAGAAGATCCTACAGGACATAATTCAGCCCAGAGAAAGCGCAGACACCTAAGCTGTTTGCCTGAACTGATGGTTAGAGTGAACCATGCAGTCTACGTAGGGTCATAGGAACAACTGTGTTAGTGGAATTGCTGATTATCTCTCCCCAAAGCTCACCTGCTGTCAACGCTGTCTAGGAATTTATGTCACAGAAACATTTCTGACCTCTTTTCACTGCATTTAATATCAGGGATCTTTAGAAATGCATCCAGACATGGTGTTTGGCTCAGATGAGGTTTGATGATGAAGTGTTCCTGGAAAATAAACTAACCCCCcaacccctttttttttttttttttttttttttttttggaaaatgttttttgaaaattatttttattgttaattttgttttaaaatgtcaccATAATGGGCCCCTTTGAAAGCAGTTGAAAGAGTTGGGGGGatcctttatttgtttaaatggcattaggatttaaaaataaattggtTTCCATCATGAAATGGGAGTCACTGATTGATACAGTATCTGTCGCTTAAGAAGCTGTTGTTACTTTGGTGGCTTTTCAAAATTCCTGCattctttattttgtaaagAATTAAGAACATAAACATGTTAGAAACCTTAAGGTAAAGTACTGTAGTTGTCCTGAACAAGACCAATGATTGATTGTTTGAGTTATTAATTGATTGATGCCccttttattaaaacaactacttgaattttaatcaaatacatttaatttcacttttaaaatCACATATTCGAGTTTACTGACTCCACATCTTAGATTTGAGCATTACTGAGGCTGGTGTTTATGGTATAATAGTGTTAAATAAGCCTGGGTTAGGAggtgaggtaaatgtgtggGGGGAAATGACTGGTGCCTTACTGTGTCTGGAGTGCCAGCCTCGGTTAAACGCATACTGTCCTTTTCTCAGTTTAGATGCAGCTGTTTTTAATTGTCCCATTGTTGCCAGAACACCTAGCATAATCTTTTTAAACAACTTCTTTCCTATATACAATGCTTTTATTGATGCTAAGCATGTTTTGCAAAAAAGGTCGTTTTCACAGTACTAGAAAATCTGTTTGTCACTGTCACGCTCTGTTACAATGCAGTAttgagagtatgagagagagataaagggaaagagagagagagagagagagagagattatatcACTAACTGAAAGAATGAAAGGCATTCTGCCCCTGTCCATATTTACatccttcaaagtatttatgaGGGGGCTACGCTATGATAGATGGTGACCTGGcatttttaactgtattttaatatattccAGTAGCATACTCAGCGCTTTTATGCATCCAGATATTGTGTCCAACTTGTGTGTGTAGATGGgaaacatttagagcattaagcTTCTATACGCAACTCTACACTGTATAGATGATGTTGCTCCTCATCATTGTGTACGGTAAAGGTTGTTTTGTTATGTGTCAATTTACAGCTTTAACCTGACAGATTTCCTGAATAAACAGGACTGCAACCA
>XM_007228322.3
TACTTCCGTAAATAGACGCAGACTAGTTGTGTATCAGATTCATCGAGAAGCCAGAGACAGAGCGGTGGACAGGCGAGAGTTCTTTAAATATTATCCGACAAGTGGCTCCCACAGACCCCCCAGAGCTGACCTCTTTATCCAGTCCACCGGTGGTCATAACTGGTTTGTGGAGGATGCCCAAGGAATCCAATGAATCATCCAGTGAGGCGAACAAGAAGATGGACAGTAAAGGGCCAGatgactccacagagcagacAGAGGCATCGGAAGAGATGCTGCCTAGCCCACCCAAGTTTGTGTCTATGGAAGAGCTAATGGAGACTGCTAAAGGAGTGACTAACATGGCATTGGCTCATGAGATTGTGGTGAATGGTGGCTTTCAGGTTAAACCCACTGAGCCTGCTGAAggaagCTTAGAGAAACGTGTTAAGGAAATCATGCACAAGGTATTCTGGGATTCTCTTGAGGCACAGCTGAATGAGGACCCCCCTGTCTTTGACCACGCCATCCAACTGGTTGGGGAAATTAAGGAGACCCTGCTGATGTTCCTGAGGCCGGGGCAAACTCGGTTGAAGGGGCAGATTGAGGAAGCACTGGACCTGTCCCTCATCCAGCAGCAGGCTGAGAACGGAGCGCTGGACATCAGCAAGGTGGCTCAGTTCATCATCAGCATGATGGGAGCTTTCTGCGCACCTTGCAGAGACGAAGACGTCCGAAAGCTTCGGGACATCACTGACATTGTGCCCCTTTTTAAGGCTATTTTCGCAGTTCTGGACAAGATGAAAATTGACATGGCCAACTTCGCCATCACTAGTCTCCGTCCTCACCTCCTGCAGCAGTCAGTGGAGTATGAGAGGCAGAAGTTTCAAGATTTTCTGGACAAACAGCCCAatGCTTTAGACTTCACTCTGAAATGGCTCCAGGAAACTGCAGACTCGCTCAAAGAAAGTCAGGGAGGAGCAGCAAGTGATTCTAGTTCTTCCTCTCAGCTGGCGCTCAGCGTGCATAATCAGGCCTATTTACGGCTGCTCAACTGGGACCGTAGCACAGACTCCTTCCCTGAGACTGCTCTGATGGACAGGGGCAGGTTTCTGGAGATGCAGCTGGAGCTTGAGCGCCTGGTGCTGGTGGCGGCTGTGCTTCTCATTGTGTATAACAGTGCGGGAGAGGCCATCTCTGGCCTGCCAGGCCTCATGGACAGGCTTAAGAATACCATGAAAATCCTGCTTGCAGAGATGCACACCCCGTCATTCAAACTGGATGAAGCATTCTCTTCAATTGGAGAGAAGCTGTGTTTGGAGCTAGGAGAATGCCTGTCTCAGCATGGATTCTCACCCTTCCACACGGACAGACAGAGTGCCCTCAAAGGCCAAGTAGCAGCTGTCCAGTCTGCAGACAACCCCATCCGTAAACTCATCGATTCTCGGATTCAGGCCTATCTCCTGTGCTTCCTGGAGTCAAGCCAACATAAGACCCCCCCAACAATTCCTGGAGGTCTGGCACCTGTCAGTAAAGAGCTGGAGGAGCTTGGCGTCAAACTGAGCCGCTTGGTTAACTTCAACAAGCTTGTCTTTTCTCCGTTCTACCAGAAGATCCTACAGGACATAATTCAGCCCAGAGAAAGCGCAGACACCTAAGCTGTTTGCCTGAACTGATGGTTAGAGTGAACCATGCAGTCTACGTAGGGTCATAGGAACAACTGTGTTAGTGGAATTGCTGATTATCTCTCCCCAAAGCTCACCTGCTGTCAACGCTGTCTAGGAATTTATGTCACAGAAACATTTCTGACCTCTTTTCACTGCATTTAATATCAGGGATCTTTAGAAATGCATCCAGACATGGTGTTTGGCTCAGATGAGGTTTGATGATGAAGTGTTCCTGGAAAATAAACTAACCCCCcaacccctttttttttttttttttttttttttttttggaaaatgttttttgaaaattatttttattgttaattttgttttaaaatgtcaccATAATGGGCCCCTTTGAAAGCAGTTGAAAGAGTTGGGGGGatcctttatttgtttaaatggcattaggatttaaaaataaattggtTTCCATCATGAAATGGGAGTCACTGATTGATACAGTATCTGTCGCTTAAGAAGCTGTTGTTACTTTGGTGGCTTTTCAAAATTCCTGCattctttattttgtaaagAATTAAGAACATAAACATGTTAGAAACCTTAAGGTAAAGTACTGTAGTTGTCCTGAACAAGACCAATGATTGATTGTTTGAGTTATTAATTGATTGATGCCccttttattaaaacaactacttgaattttaatcaaatacatttaatttcacttttaaaatCACATATTCGAGTTTACTGACTCCACATCTTAGATTTGAGCATTACTGAGGCTGGTGTTTATGGTATAATAGTGTTAAATAAGCCTGGGTTAGGAggtgaggtaaatgtgtggGGGGAAATGACTGGTGCCTTACTGTGTCTGGAGTGCCAGCCTCGGTTAAACGCATACTGTCCTTTTCTCAGTTTAGATGCAGCTGTTTTTAATTGTCCCATTGTTGCCAGAACACCTAGCATAATCTTTTTAAACAACTTCTTTCCTATATACAATGCTTTTATTGATGCTAAGCATGTTTTGCAAAAAAGGTCGTTTTCACAGTACTAGAAAATCTGTTTGTCACTGTCACGCTCTGTTACAATGCAGTAttgagagtatgagagagagataaagggaaagagagagagagagagagagagagattatatcACTAACTGAAAGAATGAAAGGCATTCTGCCCCTGTCCATATTTACatccttcaaagtatttatgaGGGGGCTACGCTATGATAGATGGTGACCTGGcatttttaactgtattttaatatattccAGTAGCATACTCAGCGCTTTTATGCATCCAGATATTGTGTCCAACTTGTGTGTGTAGATGGgaaacatttagagcattaagcTTCTATACGCAACTCTACACTGTATAGATGATGTTGCTCCTCATCATTGTGTACGGTAAAGGTTGTTTTGTTATGTGTCAATTTACAGCTTTAACCTGACAGATTTCCTGAATAAACAGGACTGCAACCA

Function

symbol description
tcp11l1 Predicted to be involved in signal transduction. Orthologous to human TCP11L1 (t-complex 11 like 1).

NR:

description
T-complex protein 11-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228321.3 True 3158 mRNA 0.44 10 23657234 23665880
XM_007228322.3 False 3104 mRNA 0.44 10 23657234 23665877

Neighbor

gene id symbol gene type direction distance location
LOC103046977 LOC108410746 coding downstream 2131 23612063 ~ 23655103 (-)
LOC103047696 kiaa1549l coding downstream 54889 23506008 ~ 23602345 (-)
syt9 syt9b,syt9,LOC108410565,LOC107572357,LOC107707488,LOC107686648,LOC107701097 coding downstream 395880 23202018 ~ 23261354 (-)
LOC111195748 NA coding downstream 432179 23224605 ~ 23225055 (-)
olfml1 olfml1 coding downstream 489748 23161946 ~ 23167486 (-)
mpped2 mpped2,LOC108269255,LOC108415426,LOC107572223,LOC107589164,LOC108415121 coding upstream 506409 24172289 ~ 24213659 (-)
LOC103032449 LOC108412069,LOC108268535 coding upstream 744948 24410828 ~ 24416431 (-)
ciapin1 ciapin1,LOC107735894,LOC107682982,LOC106904989,LOC107577787 coding upstream 842357 24508237 ~ 24514730 (-)
LOC103031505 shank2,LOC108411910,LOC107572162 coding upstream 866768 24532648 ~ 24746996 (-)
LOC103042272 zgc:86725,actc1,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 1091351 24757231 ~ 24774151 (-)
G207557 NA non-coding downstream 128098 23528435 ~ 23529136 (-)
G207551 NA non-coding downstream 367206 23247533 ~ 23290028 (-)
G207552 NA non-coding downstream 413961 23241744 ~ 23243273 (-)
G207531 NA non-coding downstream 558328 23095821 ~ 23098906 (-)
G207536 NA non-coding downstream 605167 23051066 ~ 23052067 (-)
G207604 NA non-coding upstream 237034 23902914 ~ 23903144 (-)
G207616 NA non-coding upstream 304437 23970317 ~ 23970947 (-)
G207617 NA non-coding upstream 305915 23971795 ~ 23972789 (-)
G207618 NA non-coding upstream 307404 23973284 ~ 23973564 (-)
G207623 NA non-coding upstream 313829 23979709 ~ 23980351 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 244280 23220469 ~ 23412954 (-)
LOC103035944 mical3 other downstream 701210 22885432 ~ 22956024 (-)
LOC103034681 LOC108436714 other downstream 1410121 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 1674504 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 2874250 20677453 ~ 20782984 (-)
dnajc24 dnajc24 other upstream 273045 23938925 ~ 24020314 (-)
G207707 polr2c other upstream 858854 24524734 ~ 24529067 (-)
G207772 NA other upstream 1282251 24948131 ~ 24948851 (-)
usb1 NA other upstream 1585355 25251235 ~ 25260167 (-)
G207903 NA other upstream 1651122 25317002 ~ 25352674 (-)

Expression


Co-expression Network