CI01000009_14012800_14024940 (ITGB2)


Basic Information

Item Value
gene id CI01000009_14012800_14024940
gene name ITGB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14011950 ~ 14025231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_14012800_14024940.mRNA
ATCTATGGCAGTTTATAGACCATTTTTATCATCTACTTCTGAGATGTGTCAGCCGCACATTATATTGGCTTCTGCTAAAAACATCACCTGCTTTTTTTCAAGTTCACACTTTTTCTTTGCAGCACCTTGCACAGCTTCTGCAAAACTGCTCAGGAACTGAAAAGGTTTATTTGCAATTTAAAACAGAGAGCAACCGCAATTTCATTTTTCATGTCAATAGTTTTCAGTAGTTGTTTGAGATGCTGAAAATAAGGAACTATGATGATAAAGAATGCTGTTTTACATTAGGAAATGCTTCAGTCAGTGTGTCTGAGGGGACTTCTTCTGTTGTTGGTGGGAAGACAGGTCTACACTCAGGAGCAATGCTTAAAAGCTTCAGTATACACATGTGCAGACTGTATCAAATCCGGACCCGGCTGTGCCTGGTGTAAAGACTTGAATTTCACCAAGACTGGGGAGCAGGAAGCAGCACGTTGTGACACTGTTGCCGTGCTTAAAGAAAGAGGATGTCCCGTCAAGAGCATAATCAATCCTAAAAACAATATTCAGTATGATTCAAACAGGCCCCTGAATACTGGTCAGAATACTGGTCAAAATCCAGTGCAAATCCAACCACAAGAAATACATCTAGATCTTAGACCAGGGATGCCCCATGAATTTCAGCTATATTTTAAAAGGGCAGAAGGCTATCCCATAGATCTTTACTACCTAATGGATCTCTCCTACTCTATGAAAGACGATTTGGAAAATGTGAAAAACCTGGGAAATGATTTACTTAAAGAGCTCAATAAAATTACTGGCAATGCCAGAATAGGATTTGGTTCGTTTGTCGACAAAACTCTTCTTCCATACACTGACACCAATGAAGCGAAGCTCAAACAGCCATGCGCGGATAAAAATGAACCATGCCAGCCTGCATTTGGCTTTCAGCATGTGCTTTCACTAACAAAAGACGGGAATAAGTTTAGAGATATGGTAGCCAAGCAGCATATATCTGGAAACCTGGACCCTCCAGAGGGAAGTCTGGATGCCATCATGCAAGCCGCTGTCTGTGTGGATGAGATTGGTTGGGGAAACAGCACTCGGCTGCTGGTGCTGGCCACTGATGACGGCTTCCACATGGCAGGGGATGGAAAACTCGCTGCCATTCTGGAACCAAACAAAGAAACCTGTCAGATGGTCGGCAATAAGTACAGCATGAGCAACATCTGGGACTACCCATCTGTTGGACAGATAGCTCGCAAGCTGGAGGAGCAAAACATACAACCAATTTTTGCCGTCACTAAAAAAATGGAAACTGTGTACGCAGAGCTGAGCAAACTGATCCCTAAATCTGCAGTAGGAGTGCTTTCTGACGACTCAAGCAACGTTGTCAAACTAATTGTGGATGCATACAATAACTTAACCTCTGAAGTGATCATGGCTCATGATGCCCTCCCGAACTTCATATCTGTGAAATACACATCAAACTGTGCAGGTGGAGAAAAACCCAGTGACAGGGGGAAGTGTGACAATGTGAACATTGGACAGAACGTGACTTTTACTGTGAAAGTAACAGCAGACAAATGCTTTGAGGACAGTCAGAGCTTCCTCATTGGGCCACTGGGCTTTAATGAAAAACTGAAAGTGACCGTTCAGACTCGATGTAAATGTGAATGTGACGATTCCAATAAACCTCATCCTCACTGTGGGGGTCAGGGTACAGTCGTCTGTGGCAGCTGCAGTTGTAATACTGGTTACTTAGGACAGCGCTGTGAGTGCAAACTAGGCCAAAAGGACGAGGCCTCACTGAAAGCGCAGTGCCGGAAGGACAACGGGACCGAATGCGAAGGCAAAGGAGATTGTGTTTGTGGACGGTGTCAGTGCCATATCACAGAGGGCGGTGGCAATTTCTATGGCGAACACTGTGAATGTGACGATGAGCACTGTGAAAAATATGAAAATAAACAGTGTGCAGGCCATGGCAAGTGCAAATGTGGTAAATGTGAGTGTGAACAAGGCTACGAGGGCACAGCGTGTCACTGTGCAAAATCCGATGAGGCTTGCAAGACAGATGGGAGTGTTTGTTTTAACCGTGGTAAATGTGAATGTAACCGGTGTGTATGTGAGAGAGGATACAAGGGGCCCTACTGCAAAACATGTCCTACTTGTCAACAATGTCCTGTGGGGCCGAACATAGCAGCCATCGTAGGAGGATCTCTGGCAGGTGTGGCGTTGATTGGTCTCCTAATCCTCCTCATTGTCAAGGCAATTCTATATGCAAGCGACCTTAGAGAATGGAAGAGATTTGAAAAAGACAGAAAACATGAAAAAACATCTGGTACCAACCCATTATTCCAGAATGCTACGACCACAGTTCAAAACCCAACATTTTCTGGAGATTCTTGAAAAAACTTGTTGGTGCTGAAACGCATGAAGCACAGTGTGGATGTGTGGTAAATAATCTATAGGTCTGATACATGATCATGCAAAAAAATGAAAGAGCTTAAAATGTCCATTGCAATCTTTATGTGAAATTCATAAAATTCGTGCACTGATTTTATTGTATTAGTAATAATTCAGATTAAATGTTTAACTGCATTAAATATATTTAACATAGTTTATATTTAACATGCTTTTTTATTTTCTGTTTTGTCTCATTTACAAAGATTGGTCACAATTTTTTCAAATTTTGTATACAGGGAAATACAGAAGAGTAAAGAGTGCAAAATTTACTTTTACAACAAGTTCCATCTGGGATTAATTTATAAATAAATGTATCATTATATTTTTGTATCGCTTAATGATAAACAAGAACCTTCAATGGCACTGTTTTCTGAGGACTCTTGGAAAGGTTTTGGCAATTTCAGTTCACAAAGGCCTCGTTAAAATGTCTGTCTCTACAGTTGTGCATTGGTAAAAGCATTTACATTTTAGAAACTCTCAGTACCTTAATATTGTATGTTTCAATGTCTGTCCAGATGCAAATCCCTATGGAAACTAATGATATCTCTATGCAATGCCTCTGTACTGCATTTCACATATTCTCCATTATGAAACATGAGCACTGAACACTGAACGCTGGCTTTCCACATTATTAACATAATAGACATTTGCTTAGCTTTGCATTGTAACATGCCTATTGGTCCTTCAATGTTCATAACATTCAATTTAGGTTATAGAATATATAGGATATAGAATATATAGAATATGTGTGTTTGTATATAAAGGCTCTGTAAATGTCTAAAATATAAATAAA

Function

symbol description
itgb2 Predicted to enable amyloid-beta binding activity and integrin binding activity. Acts upstream of with a negative effect on definitive hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in caudal hematopoietic tissue. Human ortholog(s) of this gene implicated in coronary restenosis; leukocyte adhesion deficiency; and leukocyte adhesion deficiency 1. Orthologous to human ITGB2 (integrin subunit beta 2).

GO:

id name namespace
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06464 ITGB2, CD18; integrin beta 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_14012800_14024940.mRNA True 3238 mRNA 0.41 14 14011950 14025231

Neighbor

gene id symbol gene type direction distance location
CI01000009_13990326_14004387 VIL1 coding downstream 7124 13989732 ~ 14004826 (-)
CI01000009_13983271_13988001 NA coding downstream 23602 13983208 ~ 13988348 (-)
CI01000009_13975122_13976026 NA coding downstream 34826 13975099 ~ 13978614 (-)
CI01000009_13963789_13974296 DNAJC10 coding downstream 37654 13962949 ~ 13974296 (-)
CI01000009_13946619_13952884 NA coding downstream 58229 13946499 ~ 13953721 (-)
CI01000009_14052206_14053489 NA coding upstream 26738 14051969 ~ 14053953 (-)
CI01000009_14201347_14205288 NA coding upstream 175884 14201115 ~ 14205887 (-)
CI01000009_14248805_14255014 NA coding upstream 222412 14247643 ~ 14255775 (-)
CI01000009_14342067_14344332 NA coding upstream 316756 14341987 ~ 14344934 (-)
CI01000009_14476688_14573629 HDAC4 coding upstream 450493 14475724 ~ 14573629 (-)
G59488 NA non-coding downstream 71322 13939445 ~ 13940628 (-)
G59489 NA non-coding downstream 80269 13883972 ~ 13931681 (-)
G59470 NA non-coding downstream 147347 13826486 ~ 13864603 (-)
G59472 NA non-coding downstream 191954 13799998 ~ 13819996 (-)
G59473 NA non-coding downstream 224537 13700592 ~ 13787413 (-)
G59491 NA non-coding upstream 14093 14039324 ~ 14039893 (-)
G59552 NA non-coding upstream 50393 14075624 ~ 14075833 (-)
G59602 NA non-coding upstream 139661 14164892 ~ 14214853 (-)
G59610 NA non-coding upstream 150772 14176003 ~ 14176444 (-)
G59626 NA non-coding upstream 163154 14188385 ~ 14189163 (-)
G59097 NA other downstream 1722432 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5151387 8856310 ~ 8860563 (-)
G55814 NA other downstream 5583938 8425821 ~ 8428012 (-)
G53515 NA other downstream 8506702 5502395 ~ 5505248 (-)
G59490 NA other upstream 8333 14033564 ~ 14037873 (-)
G59811 NA other upstream 837166 14862397 ~ 14887464 (-)
G59941 NA other upstream 1106873 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1351029 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1621544 15653760 ~ 15663026 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038110 itgb2 coding NC_007120.7 CM002893.2 44961138 ~ 44983666 (-)