CI01000009_13990326_14004387 (VIL1)


Basic Information

Item Value
gene id CI01000009_13990326_14004387
gene name VIL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13989732 ~ 14004826 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13990326_14004387.mRNA
ATCTGAAGTCACTTTATAGCTTTGTGGGATGAACATATTTCATTATTAGTTCAAAAACTCATCACTCAATCTTTACAAGTCTAATATCGAATACAGCATTTTTTTTTAACTGCATATAGCTTTAGGACTGACATGAGGGTGAATAAATAATGACAGAATAATCTTTTTTTTTTTTTGTGAATAGTAACTTTTACTATTATATACTTTGCTATACGGTGAGGTCAGGAAAAGTGTAGATACAAAATATGGGTATGGTAAACTTTGTATTAGATAATACTACTCAGTGTAATATTAGATGCATACAAACATTTATGAGGAAATCATACACAGGATATGTAATTCTAGGAAACATTTTGTCTCACTGAATTCAAGTAATTCCTATCCAACCCTCCCTTTTTTTCTCTCTTCCAGGTATTTCATTGAGACTTAAGCTGGCACCATGCCACAGGACCAAGTCAAGACCGATGTTCCCAAAGTCCTCAATAAAACCACACCAGGACTTCAGATATGGAGAGTGGAGAACATGGAGCTTGTGCCCTGTCCATCTAAAACATTCGGACAGTTTTTTGAGGGAGACAGCTATGTAATACTCTATGTAAGTATCAGCACTAAGTGCCCGGTAATTAACTCTAGTGCTTTCGAGCTGACAACCTTAGAGATCAGTGAACAAATGTTTGAGCTAATAAGAAACAAAAATAATTTTCAGACTCACAAGACCAGCAACAACTACTCCTATGACATTCATTATTGGCTGGGCAAGGCCACCTCCCAGGATGAGCAGGGAGCAGCAGCGATATACACCACACAGATGGATGATCACCTAGGGGGCGTTGCTGTGCAGCATCGTGAGACCCAGGGCCATGAGAGCGCCACCTTCCAAGGATACTTCAAACAGGGCATCGTATACAAAAAAGGTGGTGTCGCATCTGGGATGAAACAAGTGGAGACAAACACGTACAACATTCGCAGACTGCTGCATGTTAAGGGAAATAAGCATGTGGTTGCAGGAGAGGTGGAAATGAGCTGGAAGAGCTTTAATAAAGGTGATGTGTTCCTGCTGGATCTGGGGAGCCTGATCATTCAGTGGAATGGACCCAAGAGTAACCGAATGGAGAGGTTAAGGGGAATGAACCTAGCGAAGGACATTCGTGACCGAGAGAGAGGTGGTCGAGCACAAGTGACTGTAGTGGAAGGAGATGATGAGAAATCCTCTGAGGAAGCCATGAAAATGATGAAGCAGGCATTGGGGGACAGAAAAGAGATCAGAGATGCCATCCCAGATGAGATTGTTGATGAGAAACTGAAGACTGCCATTAAACTCTTTCATATTTCAGATGCTGACGGTAACCTTGTAGTTCAGGAGGTGGCAGTGAAACCTCTCACACAAGACCTACTGAAAACTGAGGACTGCTATCTGCTAGATCAAGGCGGAATAAAGATCTTTGTCTGGAAGGGCAAAAAGGCATCAAAAACTGAAAGGGCAGAGTCTCTGAAGAAAGCAGAGGCCTACATAAAGGCAAAAGGATATCCTTCATCCACCTATGTAGAGACCGTGAGTGAAGGAGCAGAATCATCAGTGTTCAAGCAACTCTTCCAGAAGTGGACAGACAAGGGACAGACAGTTGGAATGGGCACCACACACAGTCCAGGGAAAATAGCCAAGGTTGAGCAAGTCAAGTTTGACGCCACCTCTATGCATGCCAGACCTGACTTGGCTGCACAGCAGAAAATGGTGGATGATGGGTCAGGCGAAGCCGAGGTATGGAGGATAGAGGACAATGAGCTCGTCCCTGTGGAAAGGAAGTGGCTTGGTCACTTCTATGGTGGGGACTGTTACCTTATTCTCTACAAATATGAAGTCAGCAGCAAAATACACTACATTCTGTACATGTGGCAAGGTCGCCATGCAAGCACAGCGGAGCTGACAGCCTCTGCATATCAGGCTGTGATTCTGGACCAGAAGTACAATGGAGAACCGGTGCAGGTCCGCGTTCCCATGGGAAAGGAGCCCATGCACCTGATGGCCATTTTCAAGGGCAAAATGGTTGTTTATGAGGAAGGAAGTTCCAGAGAAGGCTCCTCCCATTCTCAGCCATCAGCAAGATTGTTTCACGTCCATGGAACGAATGAGTTCAACACGCGTGCCATTGAGGTGCCTCCACGCTCATCTTCTCTGAACTCCAATGATGTGTTTGTGCTCAGCACAGATAAGTGCTGCTACTTGTGGTATGGCAAGGGCTGCAGTGGAGACGAGAGAGAGGTGGCCAAAACACTGGCTGACATCATCTCCAAAAGGGAGAAAAATGTTATTGCAGAGGGTCAGGAACCAGCTGACTTCTGGGTAAACCTTGGTGGAAAATCCCAATATGCCAGCAGCAAAAGACTTCAGGATGAGAACAGCAGTGTTACGCCCCGGTTGTTTGAGTGCTCCAACCAGACTGGTCGCTTTATAGCGACAGAGATTACAAACTTTAACCAGGATGACCTGGATGAGGATGACGTAATGTTGCTGGACATCTGGGATCAGACCACTAAAAATCACAGCACAATTATGTTCCGTCAGGTGTACCTGTGGATCGGCAAAGGTGCCAATGACAAGGAGAAGCATGACGCAGTGGTTACAGCACAGGAATATCTGAAGTCCCATCCTGCAGGGCGTGACCTGGATACACCTATCCTAGTGGTGAAGCAAGGGTTTGAGCCGCCCACCTTTACAGGCTGGTTCCACGCCTGGGACCCACAAAAGTGGAGTGGTGGGAAATCCTATGACCAGCTTAAATCAGAGCTGGGAGATGCAACTGATCTCATTAAAATTACTGTGGATCTGACCCAACCAACCTCAAACCAAACCAACTCAAGTAGCTCAGGTAGCTCAACTCAAGGGGCTGTGATATCCCGTTCTGTCACGCAAACCTTCCCTCCAGAGAAGCTGGTGAACGTTCAGACGGAAGACCTGCCGGATGGAGTCGATCCCACAAGAAAAGAGGACTATCTCTCAAACGACGACTTCCTCCTGATCATGGGGATTTCTCGGGTGGATTTCTATGCTATGCCATCCTGGAAGCAGCTGAACATAAAGAAAGAAAAGGGCCTGTTTTAGGATGGGCACAAATACAATCCTGTGCTACAAAACAGACTTCATTTTATGCTAAACTGTATGAATGTTAGTAGTGATGCCATGCAAAAACACTACAGTCAGGATCATTTCTTTTTAGAGTTTATAGATTTACATGTTTACAGTATATAATTACTTTATTTAAATATATTTTTTGGCACATGCAAATTGATTTATTTGAAATTGCTGTATTTGAAGTTAATGTTATAAAGCAGATGTAATTACCTTAGAGTATAATTTTACAACAGAAAATATGGGCGATATGGGAAAATGAAGTTTGCAGGTCCTTTTTACACAGCGAGTATTGAAGCTGCTTGGTGAACTTCAATTTTAATCTTTCCTTAATGCATCTCAATGGGATACCTTCAAGCACTGACTAAAAGCTGCTTTTTAGTGGCTTAAGCACTACAATAAAATTTAATATATTTGAACTAAAATAAAGATTTTTATATGAGGTTAATCATGTATAGTGAGTGTTAAGTACTGGAGACTGTCTACTGTCTAATGTAATTTCCAATGGTATTAATCATTTACTGTATACAAGAGGCACACCACCTGTCTAATGGAAAAGTCAATAAA

Function

symbol description
vil1 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin polymerization or depolymerization; barbed-end actin filament capping; and regulation of lamellipodium morphogenesis. Predicted to act upstream of or within actin filament capping and actin nucleation. Predicted to be located in filopodium tip; microvillus; and ruffle. Predicted to be active in actin cytoskeleton; cytoplasm; and lamellipodium. Is expressed in gut epithelium; intestinal epithelium; and intestine. Orthologous to human VIL1 (villin 1).

NR:

description
villin 1 protein

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process

KEGG:

id description
K05761 VIL1; villin 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13990326_14004387.mRNA True 3694 mRNA 0.43 18 13989732 14004826

Neighbor

gene id symbol gene type direction distance location
CI01000009_13983271_13988001 NA coding downstream 1384 13983208 ~ 13988348 (-)
CI01000009_13975122_13976026 NA coding downstream 12608 13975099 ~ 13978614 (-)
CI01000009_13963789_13974296 DNAJC10 coding downstream 15436 13962949 ~ 13974296 (-)
CI01000009_13946619_13952884 NA coding downstream 36011 13946499 ~ 13953721 (-)
CI01000009_13878935_13880850 DUSP19A, DUSP19 coding downstream 108882 13876342 ~ 13880850 (-)
CI01000009_14012800_14024940 ITGB2 coding upstream 7124 14011950 ~ 14025231 (-)
CI01000009_14052206_14053489 NA coding upstream 47143 14051969 ~ 14053953 (-)
CI01000009_14201347_14205288 NA coding upstream 196289 14201115 ~ 14205887 (-)
CI01000009_14248805_14255014 NA coding upstream 242817 14247643 ~ 14255775 (-)
CI01000009_14342067_14344332 NA coding upstream 337161 14341987 ~ 14344934 (-)
G59488 NA non-coding downstream 49104 13939445 ~ 13940628 (-)
G59489 NA non-coding downstream 58051 13883972 ~ 13931681 (-)
G59470 NA non-coding downstream 125129 13826486 ~ 13864603 (-)
G59472 NA non-coding downstream 169736 13799998 ~ 13819996 (-)
G59473 NA non-coding downstream 202319 13700592 ~ 13787413 (-)
G59491 NA non-coding upstream 34498 14039324 ~ 14039893 (-)
G59552 NA non-coding upstream 70798 14075624 ~ 14075833 (-)
G59602 NA non-coding upstream 160066 14164892 ~ 14214853 (-)
G59610 NA non-coding upstream 171177 14176003 ~ 14176444 (-)
G59626 NA non-coding upstream 183559 14188385 ~ 14189163 (-)
G59097 NA other downstream 1700214 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5129169 8856310 ~ 8860563 (-)
G55814 NA other downstream 5561720 8425821 ~ 8428012 (-)
G53515 NA other downstream 8484484 5502395 ~ 5505248 (-)
G59490 NA other upstream 28738 14033564 ~ 14037873 (-)
G59811 NA other upstream 857571 14862397 ~ 14887464 (-)
G59941 NA other upstream 1127278 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1371434 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1641949 15653760 ~ 15663026 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location