gal (galn,gal,LOC108443068,LOC108268663)


Basic Information

Item Value
gene id gal
gene name galn,gal,LOC108443068,LOC108268663
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28694166 ~ 28701575 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683947.1
taatgtcttccatagtaaaattgttaaaacaaaattcataaaaagaaagaaaactgtatatGGAGTTTGACCAGGGTTGCACACCATTGTGCGCATTGCTGTAGAACAAATGTGAAGTATTTACTCCGCAGCGTAAAGAGAAGAATGTGTTTAGGATGATGGAGAACACGCTGTTTATAGTACATTATCCTGCATTAGGCTGTGGTGAGTCAGCTGGGTCGTGTGCAGGTGAATATGAAGTCAGGATCATCACTAATTTACTTTCAGACTCCGCCTGCTGACGTAGAGCCGTGAAGAGCCGCATAAAGGCAGCGGAGCAGAGGAGCTGCTCACACACTCTTCCACCCAGGGCACaggctctcgctctctctctctcacacacacacacacaccgagctATTCTCCAAACAAGCAGCTAAAAACACTCAGGATGCAGAAGTGTGTTGGTGTAGTCTGTGTGTCCCTCATTCTGTGTGCTGTCCTCTCAGAGACTCTGGGCATGGTGATCGCAGCAAAAGAAAAGCGCGGCTGGACGCTGAACAGTGCTGGATACCTGCTGGGCCCGCGTCGTATTGATCATCTTATACAGATAAAGGATGCTCCCAGTGCAAGGGGGAGAGAAGAGCTGCTTGGTGAATATGCCATTGACAGTCACCGGCCGCTCAGCGACAAACATGGCCTAGCAGGAAAAAGGGACATGGAGGACGACTTCAAATCAGGAGCTCTGAGGATAACAGACGAAGACACCATCCACACCATTATAGACTTCCTAACATACCTGAGGTTGAAAGAAGTGGGAGCCCTGGATAATCTGCCTTCTTCCCTCACATCAGAGGAGCTGAGTCAGCCTTAACTCAAAACCTCACATTTCTCTGACCTCTGCCGTTCGAACACTATAATCTTCTGAATGAATGCCACTTTGTCCTTCGTCTTTCACTGTATCTTTTGCTTCTCTTTCAAGACAAAAGCTGAACGGTAACTTGAATGGTTGATTGAAGAACGTGTCACAAATAAAAGTTGTAAATGGCT
>XM_022683948.1
tATTTTAGTAGTTTAATTTTCACATTaactatacagtaccagttttttttatttaatgtattttctactttgtagattaatattaaagattaatacataagaaattacaaaaaaagtttttgttctCCACCATTTTCTGACATAAACACAATTAAGAtgatgatttgggatgagctggagcacagtgtgaaggaaaagcagcaactattgttcagcacttccaggaactccttcaagacgctgaaaACAttattccagatgactctactTCATGAAGCCATTGAGAAAATATCAAGAAATATCAAATCTGTCATCAAAGCTTATTGCTACTAAGAAGAAGCTAAATGATAAAACATCTTTTGACTCCGCCTGCTGACGTAGAGCCGTGAAGAGCCGCATAAAGGCAGCGGAGCAGAGGAGCTGCTCACACACTCTTCCACCCAGGGCACaggctctcgctctctctctctcacacacacacacacaccgagctATTCTCCAAACAAGCAGCTAAAAACACTCAGGATGCAGAAGTGTGTTGGTGTAGTCTGTGTGTCCCTCATTCTGTGTGCTGTCCTCTCAGAGACTCTGGGCATGGTGATCGCAGCAAAAGAAAAGCGCGGCTGGACGCTGAACAGTGCTGGATACCTGCTGGGCCCGCGTCGTATTGATCATCTTATACAGATAAAGGATGCTCCCAGTGCAAGGGGGAGAGAAGAGCTGCTTGGTGAATATGCCATTGACAGTCACCGGCCGCTCAGCGACAAACATGGCCTAGCAGGAAAAAGGGACATGGAGGACGACTTCAAATCAGGAGCTCTGAGGATAACAGACGAAGACACCATCCACACCATTATAGACTTCCTAACATACCTGAGGTTGAAAGAAGTGGGAGCCCTGGATAATCTGCCTTCTTCCCTCACATCAGAGGAGCTGAGTCAGCCTTAACTCAAAACCTCACATTTCTCTGACCTCTGCCGTTCGAACACTATAATCTTCTGAATGAATGCCACTTTGTCCTTCGTCTTTCACTGTATCTTTTGCTTCTCTTTCAAGACAAAAGCTGAACGGTAACTTGAATGGTTGATTGAAGAACGTGTCACAAATAAAAGTTGTAAATGGCT
>XM_022683949.1
atagtaaaattgttaaaacaaaattcataaaaagaaagaaaactgtatatGGAGTTTGACCAGGGTTGCACACCATTGTGCGCATTGCTGTAGAACAAATGTGAAGTATTTACTCCGCAGCGTAAAGAGAAGAATGTGTTTAGGATGATGGAGAACACGCTGTTTATAGTACATTATCCTGCATTAGGCTGTGGTGAGTCAGCTGGGTCGTGTGCAGGTGAATATGAAGTCAGGATCATCACTAATTTACTTTCAGACTCCGCCTGCTGACGTAGAGCCGTGAAGAGCCGCATAAAGGCAGCGGAGCAGAGGAGCTGCTCACACACTCTTCCACCCAGGGCACaggctctcgctctctctctctcacacacacacacacaccgagctATTCTCCAAACAAGCAGCTAAAAACACTCAGGATGCAGAAGTGTGTTGGTGTAGTCTGTGTGTCCCTCATTCTGTGTGCTGTCCTCTCAGAGACTCTGGGCATGGTGATCGCAGCAAAAGAAAAGCGCGGCTGGACGCTGAACAGTGCTGGATACCTGCTGGGCCCGCATGCCATTGACAGTCACCGGCCGCTCAGCGACAAACATGGCCTAGCAGGAAAAAGGGACATGGAGGACGACTTCAAATCAGGAGCTCTGAGGATAACAGACGAAGACACCATCCACACCATTATAGACTTCCTAACATACCTGAGGTTGAAAGAAGTGGGAGCCCTGGATAATCTGCCTTCTTCCCTCACATCAGAGGAGCTGAGTCAGCCTTAACTCAAAACCTCACATTTCTCTGACCTCTGCCGTTCGAACACTATAATCTTCTGAATGAATGCCACTTTGTCCTTCGTCTTTCACTGTATCTTTTGCTTCTCTTTCAAGACAAAAGCTGAACGGTAACTTGAATGGTTGATTGAAGAACGTGTCACAAATAAAAGTTGTAAATGGCT

Function

symbol description
gal Predicted to enable galanin receptor activity; galanin receptor binding activity; and neuropeptide hormone activity. Acts upstream of or within response to light stimulus and sleep. Located in neuronal cell body. Is expressed in several structures, including brain; eye; heart; kidney; and spinal cord. Human ortholog(s) of this gene implicated in familial temporal lobe epilepsy 8. Orthologous to human GAL (galanin and GMAP prepropeptide).

NR:

description
PREDICTED: galanin peptides

GO: NA

KEGG:

id description
K05244 GAL; galanin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683947.1 False 1029 mRNA 0.46 7 28694166 28701159
XM_022683948.1 True 1124 mRNA 0.43 8 28694166 28701575
XM_022683949.1 False 946 mRNA 0.47 6 28694166 28701148

Neighbor

gene id symbol gene type direction distance location
LOC103041235 NA coding downstream 10664 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 72068 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 204732 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 217312 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 326209 28310866 ~ 28367957 (-)
LOC111195773 NA coding upstream 33611 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 170265 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 317645 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 342400 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 732904 29434479 ~ 29471880 (-)
G208787 NA non-coding downstream 656 28684584 ~ 28693510 (-)
G208778 NA non-coding downstream 47543 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 195483 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 195803 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 196875 28496451 ~ 28497291 (-)
G208827 NA non-coding upstream 13735 28715310 ~ 28715632 (-)
G208843 NA non-coding upstream 64108 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 90549 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 178409 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 212585 28914160 ~ 28923330 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 425797 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2037982 26655443 ~ 26656184 (-)
G208046 NA other downstream 2481325 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2576534 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2605751 26086651 ~ 26088415 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 81508 28783083 ~ 28860774 (-)
G209090 NA other upstream 1322386 30023961 ~ 30024550 (-)
G209127 NA other upstream 1460882 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1499956 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1812332 30513907 ~ 30803356 (-)

Expression


Co-expression Network