RNA id: XM_022683949.1



Basic Information


Item Value
RNA id XM_022683949.1
length 946
RNA type mRNA
GC content 0.47
exon number 6
gene id gal
representative False

Chromosome Information


Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28694166 ~ 28701575 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


atagtaaaattgttaaaacaaaattcataaaaagaaagaaaactgtatatGGAGTTTGACCAGGGTTGCACACCATTGTGCGCATTGCTGTAGAACAAATGTGAAGTATTTACTCCGCAGCGTAAAGAGAAGAATGTGTTTAGGATGATGGAGAACACGCTGTTTATAGTACATTATCCTGCATTAGGCTGTGGTGAGTCAGCTGGGTCGTGTGCAGGTGAATATGAAGTCAGGATCATCACTAATTTACTTTCAGACTCCGCCTGCTGACGTAGAGCCGTGAAGAGCCGCATAAAGGCAGCGGAGCAGAGGAGCTGCTCACACACTCTTCCACCCAGGGCACaggctctcgctctctctctctcacacacacacacacaccgagctATTCTCCAAACAAGCAGCTAAAAACACTCAGGATGCAGAAGTGTGTTGGTGTAGTCTGTGTGTCCCTCATTCTGTGTGCTGTCCTCTCAGAGACTCTGGGCATGGTGATCGCAGCAAAAGAAAAGCGCGGCTGGACGCTGAACAGTGCTGGATACCTGCTGGGCCCGCATGCCATTGACAGTCACCGGCCGCTCAGCGACAAACATGGCCTAGCAGGAAAAAGGGACATGGAGGACGACTTCAAATCAGGAGCTCTGAGGATAACAGACGAAGACACCATCCACACCATTATAGACTTCCTAACATACCTGAGGTTGAAAGAAGTGGGAGCCCTGGATAATCTGCCTTCTTCCCTCACATCAGAGGAGCTGAGTCAGCCTTAACTCAAAACCTCACATTTCTCTGACCTCTGCCGTTCGAACACTATAATCTTCTGAATGAATGCCACTTTGTCCTTCGTCTTTCACTGTATCTTTTGCTTCTCTTTCAAGACAAAAGCTGAACGGTAACTTGAATGGTTGATTGAAGAACGTGTCACAAATAAAAGTTGTAAATGGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283390 lncRNA downstream 656 28684584 ~ 28693510 (-) True G208787
TU283365 lncRNA downstream 26962 28662211 ~ 28667204 (-) False LOC107197304
TU283366 lncRNA downstream 30118 28662211 ~ 28664048 (-) False LOC107197304
TU283363 lncRNA downstream 30266 28662211 ~ 28663900 (-) False LOC107197304
TU283373 lncRNA downstream 47543 28644660 ~ 28646623 (-) True G208778
TU283440 lncRNA upstream 14162 28715310 ~ 28715632 (-) True G208827
TU283458 lncRNA upstream 64535 28765683 ~ 28766695 (-) False G208843
TU283459 lncRNA upstream 65617 28766765 ~ 28769030 (-) True G208843
TU283464 lncRNA upstream 81960 28783108 ~ 28791943 (-) False lrp5
TU283466 lncRNA upstream 90976 28792124 ~ 28794434 (-) True G208849
XM_022683945.1 mRNA downstream 10664 28668730 ~ 28683502 (-) False LOC103041235
XM_022683944.1 mRNA downstream 12914 28668730 ~ 28681252 (-) True LOC103041235
XM_015603785.2 mRNA downstream 30242 28662183 ~ 28663924 (-) True LOC107197304
XM_022683940.1 mRNA downstream 72068 28602890 ~ 28622098 (-) True LOC103040620
XM_007241085.3 mRNA downstream 204732 28483491 ~ 28489434 (-) True psma1
XM_022683950.1 mRNA upstream 34038 28735186 ~ 28742593 (-) True LOC111195773
XM_022684357.1 mRNA upstream 81935 28783083 ~ 28860774 (-) True lrp5
XM_022683968.1 mRNA upstream 170692 28871840 ~ 28888885 (-) False LOC103034116
XM_022683966.1 mRNA upstream 170692 28871840 ~ 28888885 (-) True LOC103034116
XM_022683967.1 mRNA upstream 170692 28871840 ~ 28888826 (-) False LOC103034116
TU283202 other downstream 425824 28259304 ~ 28268342 (-) False wwp2
XR_002651797.1 other downstream 1541866 27146036 ~ 27152300 (-) True LOC111195771
TU282801 other downstream 2037982 26655443 ~ 26656184 (-) True G208394
TU282385 other downstream 2481325 26212058 ~ 26212841 (-) False G208046
TU283796 other upstream 1322813 30023961 ~ 30024550 (-) True G209090
TU283834 other upstream 1461309 30162457 ~ 30162907 (-) False G209127
TU283837 other upstream 1461309 30162457 ~ 30162973 (-) True G209127
TU283818 other upstream 1500457 30201605 ~ 30206650 (-) False LOC103038932
TU283958 other upstream 2397696 31098844 ~ 31099861 (-) True G209224

Expression Profile