G37893


Basic Information

Item Value
gene id G37893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19798577 ~ 19799242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51111
ttgGGTCATGACTGCCTCTATAAATACTACAAAGCAAGTGCAAAAcaatccatttatccatccattttccgtaaatcagttgaaagagtttggttTCAGGAATCATTTGCTACATTGAGTCGTTTGATTTGCTTCCTTATTGCGACATCCTTATAAGGAAACCTAAATAGAACCAACCTGACACCACCCCTTACCCATCAActcccaccagagccccacccactggatcagtcattttggttgagaacctcagacagtacgcagcaggattagccagtagacttcttctgagggagggagctgtacctactgtctgtggcaagtcagcagataagggagataaaagtacttttaaatagtGAGTCTCGTGCTTACTTTGTATTTtaccatttagcacaagctaacactaacatgtgGTAAATGCTTATTAggcatggccagcaacagcttatttgcataaaagggacagagctcttaaatggctcattctgaaagggactgaaactggtaagaatagagctggagAGATGAGCATATATACTTTATATGAGCATATTTTGTACAGAATAGCCCATATACCTATTCTTACTTATGTAAAAATAGGTAAAATATGTTCCCTTTAATACATGATGATGATAAACCCTGATTATGTTGTGAGTTCCGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51111 True 666 lncRNA 0.39 1 19798577 19799242

Neighbor

gene id symbol gene type direction distance location
LOC103041296 LOC108437306,LOC108274024 coding downstream 18082 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 89968 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 166249 19627600 ~ 19632328 (-)
LOC103040263 NA coding downstream 175200 19616411 ~ 19623377 (-)
rbp3 LOC108437312 coding downstream 191635 19604241 ~ 19606942 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding upstream 2760 19802002 ~ 19816181 (-)
LOC111192421 NA coding upstream 52642 19851884 ~ 19858626 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 936061 20735303 ~ 20781329 (-)
cops3 cops3 coding upstream 984687 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 1067558 20866800 ~ 20869080 (-)
G37916 NA non-coding downstream 5966 19776897 ~ 19792611 (-)
G37895 NA non-coding downstream 140464 19657519 ~ 19658113 (-)
G37834 NA non-coding downstream 277184 19521071 ~ 19521393 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding downstream 283974 19509466 ~ 19514603 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding downstream 289995 19489836 ~ 19508582 (-)
G37921 NA non-coding upstream 1318 19800560 ~ 19800813 (-)
G37920 NA non-coding upstream 1706 19800948 ~ 19801247 (-)
G37927 NA non-coding upstream 49631 19848873 ~ 19849320 (-)
G37928 NA non-coding upstream 52005 19851247 ~ 19851472 (-)
G37929 NA non-coding upstream 52302 19851544 ~ 19851803 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 197293 19544225 ~ 19601284 (-)
G37616 NA other downstream 1163479 18633578 ~ 18635098 (-)
G37603 NA other downstream 1225401 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1480620 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 2002589 17789951 ~ 17795988 (-)
c4h10orf128 NA other upstream 19026 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 712429 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2074078 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2214263 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3581403 23380645 ~ 23387442 (-)

Expression


Co-expression Network