slc39a11 (slc39a11,s39ab,LOC107653972,LOC107693650)


Basic Information

Item Value
gene id slc39a11
gene name slc39a11,s39ab,LOC107653972,LOC107693650
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20511671 ~ 20679431 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51290
CAGATAAAGCAGAGAATGGAGAAGCGTACCAGAGAAGAAAGGGCGCCCCCTCTGGCCATTCAGAAGAACAGGAAGTCGGTACCAGACCGCCAGAAGTCAGCGCAGCATCGGGAAGCAGCTGGAGACGCATCGTATTGCTGATTCTTGCCATCACCATCCATAATATCCCCGAGGGTCTGGCAGTGGGGGTGGGATTCGGAGCTGCAGGGAAGACGTCCTCAGCCACGTTTGAGAGCGCCAGgaATTTGGCTATAGGCATTGGCATCCAGAACTTCCCAGAAGGCCTTGCGGTGAGTTTGCCGTTGCGAGGCTCTGGAGTGTCCACATGGCGATCCTTCTGGTATGGGCAGCTCAGCGGGATGGTGGAGCCGCTGGCGGGGTTGCTAGGCGCCGTTGCCGTGGTGCTGGCCGAGCCGTTGCTACCCTATGCTTTGGCCTTTGCAGCAGGGGCCATGGTATATGTAGTGGTTGACGACATCATACCTGAAGCCCAAGTCAGTGGAAACGGGAAGCTGGCATCCTGGACCTCCATCATGGGTTTCATTGTGATGATGTCACTGGACGTTGGCCTGGGGTGAAGCTGTCCGTCCGCTGGAGCTCTGAATGACCTCTGTGAATGTCCTGTGCACTGGCAGCTCTGTAAACGGGACCAAAATAACTGTACTTTCAGAAATCAGGGTGATGAAGTGGAGaaggctttgttttttttactgatatttttatttacaaattattaattgttttttttttcaagcaagAAAATGAGTGATTAGTTATTAAAGAATGACCAAATACTTGAAGTTAATACTTTATAATGAGGATaatcagtgtgtgagtgagtgtgtgtgtgttattgacAGTTCAGAGTTTACATAATATCCCTCAGATTTGTTATAAAGACAGTAACTCCCATTCTATTTGAACTGGATAAAGTACCATGTACTTCAATGCCCCGTCCcacatttttgtgtatttttaaaaccttttttcctTCTTAAGGCCCTTTCACAccgattatatatttttcatgcgtaaaaaa
>XM_022669325.1
GCGGGACTTGCTGCCGCTCGTAGACACGTGTACAGGGAAAGGAGGAAGTAAATACGGTGGACTTTTCTCAGTTGGTGCCTGTGTTTtcaGCTGGGCACCATGCTTCCTGACCACAGTCCCGTGGTTCAGGCCCTGCTGGGAACTCTGTTCACCTGGGGACTGACTGCTGCAGGGGCTGCTCTGGTCTTTGTTTTCTCCAGCAGACAGaagcGCATCCTGGATGGAAGTCTGGGCTTTGCAGCAGGGGTGATGTTGGCAGCCTCGTACTGGTCCCTGTTGGCCCCTGCAATCGAGATGGCTGAGGAATCTGGGAAATACGGGGCTTTTGCCTTCTTCCCGGTTGCTGTGGGTTTTGCACTGGGAGCAGCGTTTGTTTACTTTGCCGACCTGATGATGCCGTACCTGGGTGTTGGTGCAGACCCACATACGTCGCTTGCCCTCCCCGCCGATGCCAAACCGCTGAAAGAGAAGATGGAAGATcctgtagctccgcccacagAAGCAGAGGAGATGTCCATCAGGATAGGTAGAGCTGGAATTCACTCAGATAAAGCAGAGAATGGAGAAGCGTACCAGAGAAGAAAGGGCGCCCCCTCTGGCCATTCAGAAGAACAGGAAGTCGGTACCAGACCGCCAGAAGTCAGCGCAGCATCGGGAAGCAGCTGGAGACGCATCGTATTGCTGATTCTTGCCATCACCATCCATAATATCCCCGAGGGTCTGGCAGTGGGGGTGGGATTCGGAGCTGCAGGGAAGACGTCCTCAGCCACGTTTGAGAGCGCCAGgaATTTGGCTATAGGCATTGGCATCCAGAACTTCCCAGAAGGCCTTGCGGTGAGTTTGCCGTTGCGAGGCTCTGGAGTGTCCACATGGCGATCCTTCTGGTATGGGCAGCTCAGCGGGATGGTGGAGCCGCTGGCGGGGTTGCTAGGCGCCGTTGCCGTGGTGCTGGCCGAGCCGTTGCTACCCTATGCTTTGGCCTTTGCAGCAGGGGCCATGGTATATGTAGTGGTTGACGACATCATACCTGAAGCCCAAGTCAGTGGAAACGGGAAGCTGGCATCCTGGACCTCCATCATGGGTTTCATTGTGATGATGTCACTGGACGTTGGCCTGGGGTGAAGCTGTCCGTCCGCTGGAGCTCTGAATGACCTCTGTGAATGTCCTGTGCACTGGCAGCTCTGTAAACGGGACCAAAATAACTGTACTTTCAGAAATCAGGGTGATGAAGTGGAGaaggctttgttttttttactgatatttttatttacaaattattaattgttttttttttcaagcaagAAAATGAGTGATTAGTTATTAAAGAATGACCAAATACTTGAAGTTAATACTTTATAATGAGGATaatcagtgtgtgagtgagtgtgtgtgtgttattgacAGTTCAGAGTTTACATAATATCCCTCAGATTTGTTATAAAGACAGTAACTCCCATTCTATTTGAACTGGATAAAGTACCATGTACTTCAATGCCCCGTCCcacatttttgtgtatttttaaaaccttttttcctTCTTAAGGCCCTTTCACAccgattatatatttttcatgcgtaaaaaatgataaaaacctTCTGATTGATtgggacacttttttttttttaatggagctAATAAATGTCCATTCTTTCAGTTTCTTTGTTCATTGGACTTTCTGCTCTCTTTCATTTCCTccacttaacccttgtgtggtgttcggtctgtgggacccgttttcatttttcatcaaatgatac

Function

symbol description
slc39a11 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Orthologous to human SLC39A11 (solute carrier family 39 member 11).

NR:

description
zinc transporter ZIP11 isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14717 SLC39A11, ZIP11; solute carrier family 39 (zinc transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU51290 False 1039 lncRNA 0.47 5 20511846 20536358
XM_022669325.1 True 1758 mRNA 0.49 10 20511671 20679431

Neighbor

gene id symbol gene type direction distance location
LOC111192421 NA coding downstream 653045 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 695490 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 731176 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 803062 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 879343 19627600 ~ 19632328 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 55872 20735303 ~ 20781329 (-)
cops3 cops3 coding upstream 104498 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 187369 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 197003 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 301974 20981405 ~ 20990118 (-)
G38016 NA non-coding downstream 485 20457704 ~ 20511186 (-)
G37970 NA non-coding downstream 94491 20416871 ~ 20417180 (-)
G37966 NA non-coding downstream 166501 20344882 ~ 20345170 (-)
G37963 NA non-coding downstream 226466 20284958 ~ 20285205 (-)
G37962 NA non-coding downstream 237284 20274013 ~ 20274387 (-)
G38048 NA non-coding upstream 87603 20767034 ~ 20767339 (-)
G38052 nt5m,LOC107719901 non-coding upstream 124624 20804055 ~ 20811142 (-)
G38179 med9,LOC108412951 non-coding upstream 183370 20862801 ~ 20865721 (-)
G38180 NA non-coding upstream 190587 20870018 ~ 20870550 (-)
G38181 NA non-coding upstream 192104 20871535 ~ 20871832 (-)
c4h10orf128 NA other downstream 686019 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 910387 19544225 ~ 19601284 (-)
G37616 NA other downstream 1876573 18633578 ~ 18635098 (-)
G37603 NA other downstream 1938495 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 2193714 18282490 ~ 18317957 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 1193889 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1334074 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2701214 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2785788 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 3003695 23683126 ~ 23720782 (-)

Expression


Co-expression Network