pemt (pemt,LOC107719881)


Basic Information

Item Value
gene id pemt
gene name pemt,LOC107719881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20876434 ~ 20968546 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669329.1
TCGAAGTTAAACTGTCATGTCTGCCTTGGGAACAGTGTTGGCATGAATGTGAGAGaagttaatgtttattaaatgttctgTAGGTCAGCGTGGTCGGGTTTTAAAGCGATAGTTTGAGGGTTGTTTGTGAATGAACAGCGCTGAGACGCTGCCTGTGCTGGACTGCTGCGGAGGACTCAGTAACGTGGATTATACACAGGTGGACATGTCTGTACTGTCTGATTTGACGAGGCATGTTGACCCTACTGAGCCTCGGTTCCTTGTGGCCGTCATCGCCATCATCTTCAACCCTTTCTTCTGGAATGTGGTTGCCAGGTGGGAGCACAGGACGAGGGGGCTGACGCGGTTGTTTGGAGGTCCATATGTGGCGTGCTACTGCCTGGGCATACCTATCCTGCTCCTCAACGTTTACCGCAGTCACAGCATTACCGTGGCTATGAAGGGTCAGCCTCGGCTGGAGCTGATGGACAGAGTTCAGGTGTATTATGCGGGGGCTGCTCTCCTGGCCGTGGGCTCGCTGTTCGTCATCAGCAGCTTCTTGGCCCTGGGCTTCACTGGGACCTTTCTTGGTGACTACTTTGGAATCCTGATGGAGCAGAAGGTCGCAGGTTTCCCCTTTAATGTCCTGGAGAACCCGATGTACTGGGGAAGCACTGCCAACTATCTTGGCTTGGCCTTAATgaatgCCAGTCCTGTAGGAGTTGTCCTGACTGCTGTGGTGGCGTTGTCCTACAGAGTGGCCATCGCATATGAAGGGCCGTTCACGGAGGAGATCTACCGGAGGAGGAGTCAGCGCTgcaagcaccaataacactggAGTGTGTTTGTCTAAGGACCACGGCCGACGTCCCACTCAGCGGTGTCCATCGACACGACTCGTAAAACCCCTCCACTCTGGAGCAGGTGTAGATGAAGACGAGGAGAAGTCTGCTGCAAATGTCATCGCTCGCTTATCTCCAGCTTTAAACCCCCCAGCTTCTGATTGGTCTAGATCCACTGAGGTCTACTGTAGGAGCAACACAGTGATGGGAGCCTTGGTAGACACCAGTCCTAATGTTCCTCAGCTATTCAGTTCTGAACTATATAGACTTCTAGAGGACTGTCTGAATCCTACTAAATCCTTTAACCCaggttttaaaatagtttacagtgttttagtgCATTTTCACGTCAGCACTATCTGGTTCGTTTGCACCCTTGGTCCAGTTTGTTTTAGCAGGTGTGCAAACTCTGAGGCAGTTCTTtagtggtgagaacgtgatctagCCTCGATACGACCCAATCAAATACACCTtaaatttgagctaaactgctgttcaggtgcagtttagaCTGATTTACTACCCAGATATTTATCATAGTATTAAACAAGCGCTCGCAATTCTCATGCTCACGTTCATGCAATTCCATTTACCAACGCAATTGCGCATGTATTTAAAAGTGCATCTGCAcatttttgttcagtgtttaatgttaaagcagcttcaaacTGCACAAATATATAAGCTAGTCTGGAACACGTCACCTTcctgctgtatttacttttttgctctttgtttattggtgcacattttggtgcatctaggtttttgcctgtgtgaaaacaaaccaaacccagTGAGAAAAtgttccaaataaacaaactaatcaaCTGATTTAGACCAGAGAAGttaactacaggtgtgaaaacacccttaaaagGCCTGACAACCACATTAAATCTTCTAAATACTTCTTTATgtacaacaaaaaagaaatagtcCAAAAATGAGTTTAAATAATATCTTATTTcccaataaaacataaacatagcATAAACATTTTGCCATAAGAAAGCATCTCACAACTAGcttacatataaaataatttatttttattaagatttgAATAATACACCCTCTATTGAGAAAGTATGAAAAAAGCAGTGCTGCTAGGGCTGGGCGAAACTGTAACTCATATGGCAATATTTGTAGAGACATGCAATATAATGTATAGGACGTTTAAAACTATAACGTATCATTGTAACATATTAGGTTTTATTTGTgaattttaggtttaggtaaGTAAGTGTTTTACTGGTGTAGTAAAATGCACTGGATGATGTTTGACATGCTGAAAAAAAGTCATTATTCGGTTTCtttaattacaaaatatttCTACAACATAATTtttctgctgtgttctgctgAGTGTCTTCCCTTTAGAAACCAAGCCATTCCTACACAAACCACACATTTTTGTATAAATGGTTTCAAATATATCAAGATTTACAATTAATTGCCTAGCCCTACGTGTTTCTTACAGTTATTATTTGACTGcaaaaagtatgttttatctgctcaaatTCGTTcaatttataaataaactaatactttaaaaaattacattattttaga

Function

symbol description
pemt Predicted to enable phosphatidylethanolamine N-methyltransferase activity. Predicted to be involved in phosphatidylcholine biosynthetic process. Predicted to act upstream of or within methylation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane and mitochondrial membrane. Predicted to be integral component of membrane. Orthologous to human PEMT (phosphatidylethanolamine N-methyltransferase).

NR:

description
phosphatidylethanolamine N-methyltransferase isoform X3

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0032259 methylation biological_process
GO:0004608 phosphatidylethanolamine N-methyltransferase activity molecular_function

KEGG:

id description
K00551 PEMT; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669329.1 True 2396 mRNA 0.42 7 20876434 20968546

Neighbor

gene id symbol gene type direction distance location
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 7354 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 78487 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 95105 20735303 ~ 20781329 (-)
LOC111192421 NA coding downstream 1017808 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 1060253 19802002 ~ 19816181 (-)
lmf1 lmf1,LOC107580192 coding upstream 12859 20981405 ~ 20990118 (-)
LOC103035258 NA coding upstream 35054 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 50575 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 75955 21044501 ~ 21048013 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 114118 21082664 ~ 21105307 (-)
G38175 NA non-coding downstream 917 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 2798 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 4602 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 5884 20870018 ~ 20870550 (-)
G38179 med9,LOC108412951 non-coding downstream 10713 20862801 ~ 20865721 (-)
G38200 NA non-coding upstream 29551 20998097 ~ 20999626 (-)
G38205 NA non-coding upstream 63377 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 74904 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 172173 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 296391 21264937 ~ 21279439 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 197003 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1050782 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1275150 19544225 ~ 19601284 (-)
G37616 NA other downstream 2241336 18633578 ~ 18635098 (-)
G37603 NA other downstream 2303258 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 904774 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1044959 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2412099 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2496673 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2714580 23683126 ~ 23720782 (-)

Expression


Co-expression Network