lmf1 (lmf1,LOC107580192)


Basic Information

Item Value
gene id lmf1
gene name lmf1,LOC107580192
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20981405 ~ 20990118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232857.3
tttttttattatttatttattaatactatTGGAGGACAAAATCTGGACGCGCATGCGCAAAGCAGGGAGAAACATGGCTGCGTGCAGCGACTCGGAGAGTAGTGAGAGCGTTCTGAGGAGGAGACGCACAGGTAAACAGCGCGAGAGCAGCGCAGGTGAGCACTCTGAGCAGAGCAGCGCGGAGCCGGAGACCCAGTCCGAGAGCAGGGAGGAGCCGGGGGTAGAAGTTCCCCTACAGACCGGGACCTACTGGCTGACCCGGATCCTCTTACTGAGGTCCATCTCCTTCATCTACTgTGTGGCGTTTGCTGTGGCATACAATCAGAATAAGCAGCTGATTGGTCAGCGGGGGTTAATGCCCAGCAGGGAGTACCTGCGCAGTGTAAAGCGTTATGTTGGGGGGAAGATTGGAGCTGCAGCGCTGGCGTACACTCCCTCCATCCTCTGGTTCCTAGACTGGGAGGATATGGATACCAACCTGGACGGCATTGCTCTGGCAGGAATGGCACTGTCTGGCTTTGTCTTACTTTCAGGGAGAGCCAACATGATCATTATGGCGGCGCTGTGGATCCTTTACCATTCCATCACCAGCATCGGACAGCTCTGgTATTCTTTTGGCTGGGAGAGTCAGCTGCTGGAGACGGGATTCCTGGGGATTTTTTTGTGTCCATTATGGAGTCTGGATCAGATGCCCCGCCGCTGCCCACCGTCCCTCATCTCCATCTGGACCCTCCGCTGGCTAATAGTGCGCATCATGCTTGGAgctGGACTGATCAAGATCAGAGGAGACCGCTGCTGGAGGGACCTCACCTGCATGGACTACCACTATgagACGCAGCCGGTTCCCAACCCCATCTCCTACTACCTGCACCACTCCCCCTGGTGGTTCCATCGCTTTGAAACTCTCAGTAATCACTTCATCGAGCTCATCGTGCCCTTCTTCACCTTTATGGGTCGACACATGTGTATGGTTAATGGTGTGCTGCAGATCCTCTTTCAGGTGGTGTTGATAATCAGTGGGAATCTGAGTTTCCTCAACTGGTTAACCATCGTTCCCAGTATAGCCTGTTTTGATGATTCAGCACTGGCATTTCTATTCCGGCccaccggaggaccacggaaaACGTTACGGAGCATACAGGCTGAGGACACCGCAGAACACAGCCCCCCTCCTAccaaaggtatGTATATAAGGCGGGTGGTAAATGTGGCTCTGGGGGTTCTGATTGCGTATCTGAGTGTTCCCGTGGTCATCAACCTCCTGAGCCCTCGCCAGGTGATGAACACTTCGTTCGACCCTCTACGAATCGTCAACACCTACGGAGCTTTCGGcagtatcACTAAGGAGCGGACGGAGGTGATTCTGCAGGGGACTCTGAGTGAGGATCACAAGGCGGAGGGGGTGGTGTGGGAGGAGTTTGATTTTGTGTGTAAACCCGGAGCTGTGGACCGCCGGCCCTGCCTGATCTCCCCCTACCACTACAGACTGGACTGGCTCATGTGGTTCGCTGCATTTCAGaCATATGAGCAGAATGAATGGGTCATCCAGATAGCAGGCAGACTTTTGGCCAATGACTCCACAGTTCTATCTCTATTAGGACACAACCCATTTGAGGGCAGAGAAAAACCACGGTGGATACGAGGAGAACACTACAGGTATAAGTTTACGAGACCCGGTAGCTCCAGTGCTGCACAGGGGAAGTGGTGGGCCAGAAAACGTATTGGACCTTATTTCCCTCCACTCAACCTGGAAGGCCTCAGGAGCTACTTTAAGTCCAGAAACTGGCCTCAGCCTGACCGACAGTGACCACACTATCAGAAAACGTGCCTCAGACTGGGACTGGAGTTTACTGAGAGAAACACGGCCTAAGAGCCTTTTAGGCAGAACTTCAGCTTACTCTGACGATGTGTGAATGCAAAACTCTGAAGGTGATGTTTTACCTAAAGAGAAAACACTGTGCCAAACATATCAGGACTTTAAGGGACCATGTATGTTT

Function

symbol description
lmf1 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial lipase maturation factor 1 deficiency. Orthologous to human LMF1 (lipase maturation factor 1).

NR:

description
lipase maturation factor 1

GO: NA

KEGG:

id description
K23555 LMF1; lipase maturation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232857.3 True 1997 mRNA 0.52 11 20981405 20990118

Neighbor

gene id symbol gene type direction distance location
pemt pemt,LOC107719881 coding downstream 12859 20876434 ~ 20968546 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 112325 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 183458 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 200076 20735303 ~ 20781329 (-)
LOC111192421 NA coding downstream 1122779 19851884 ~ 19858626 (-)
LOC103035258 NA coding upstream 13482 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 29003 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 54383 21044501 ~ 21048013 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 92546 21082664 ~ 21105307 (-)
noc3l noc3l coding upstream 306597 21296715 ~ 21320551 (-)
G38175 NA non-coding downstream 105888 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 107769 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 109573 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 110855 20870018 ~ 20870550 (-)
G38179 med9,LOC108412951 non-coding downstream 115684 20862801 ~ 20865721 (-)
G38200 NA non-coding upstream 7979 20998097 ~ 20999626 (-)
G38205 NA non-coding upstream 41805 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 53332 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 150601 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 274819 21264937 ~ 21279439 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 301974 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1155753 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1380121 19544225 ~ 19601284 (-)
G37616 NA other downstream 2346307 18633578 ~ 18635098 (-)
G37603 NA other downstream 2408229 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 883202 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1023387 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2390527 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2475101 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2693008 23683126 ~ 23720782 (-)

Expression


Co-expression Network