G38502


Basic Information

Item Value
gene id G38502
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22614764 ~ 22618122 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51929
tatttgaaataacaaataaacgaGACggtagaataaatacaaataaaaatgctgaagactgtgagtgtgagtaaatgtcaaatcaaatcaaatttatttgtatagcgctttttacactTGATctcgcaaagcagctttacagaaaaccAGCAATAAGAAAAAGATCAACTacaggtaaaacataaaaacttcAGTAAACAAGGCGAGTGGTGTCAGGGTGcgggcagggagacgaggaggcggacgcaaatgcaaacaacaggggatttattaacaaaaatagatACAAAATAACAACTGGGATAAACTGAAACaagactgaggaaactggggaaaacatggaacactgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgatgacagacaggaaacagggccaggaccttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51929 True 566 lncRNA 0.43 2 22614764 22618122

Neighbor

gene id symbol gene type direction distance location
LOC103046911 NA coding downstream 156583 22453787 ~ 22458181 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900 coding downstream 714024 21881042 ~ 21900740 (-)
LOC103023948 LOC108443262 coding downstream 743262 21863489 ~ 21871502 (-)
LOC103032007 kat7,LOC108443263,LOC107708935,LOC107739754,LOC107598609,LOC107654043 coding downstream 773395 21828128 ~ 21841369 (-)
LOC103029147 LOC108443253 coding downstream 970737 21636090 ~ 21644027 (-)
LOC111192391 LOC106675123,LOC107373546,LOC102213288,LOC106533383,LOC106676227,LOC106675084,LOC105893721 coding upstream 372608 22990730 ~ 22994904 (-)
ipmk ipmk,LOC107708928,LOC107695532,LOC108248332 coding upstream 725187 23343309 ~ 23372501 (-)
slc16a9 slc16a9 coding upstream 1150850 23768972 ~ 23778550 (-)
ccdc6 ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 coding upstream 1168636 23786758 ~ 23821493 (-)
LOC111192394 NA coding upstream 1264208 23882330 ~ 23904309 (-)
G38492 NA non-coding downstream 128919 22485471 ~ 22485845 (-)
G38490 NA non-coding downstream 132912 22481207 ~ 22481852 (-)
G38431 NA non-coding downstream 214245 22400129 ~ 22400519 (-)
G38421 NA non-coding downstream 260142 22294673 ~ 22354622 (-)
G38414 NA non-coding downstream 409693 22195131 ~ 22205071 (-)
G38506 NA non-coding upstream 125128 22743250 ~ 22743787 (-)
G38509 NA non-coding upstream 143018 22761140 ~ 22766231 (-)
G38512 NA non-coding upstream 147069 22765191 ~ 22765858 (-)
G38520 NA non-coding upstream 322498 22940620 ~ 22940864 (-)
G38522 NA non-coding upstream 348789 22966911 ~ 22967205 (-)
a1cf a1cf,LOC107654048 other downstream 576260 22013505 ~ 22038504 (-)
G38338 g6pc,g6pca.2,LOC107682718 other downstream 736387 21873320 ~ 21878377 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 1935333 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 2789112 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 3013480 19544225 ~ 19601284 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 762523 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 847097 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 1065004 23683126 ~ 23720782 (-)
G38791 NA other upstream 1213196 23831318 ~ 23960895 (-)
LOC111192423 pgap3,LOC107694083,LOC107684764 other upstream 1758554 24376676 ~ 24385379 (-)

Expression


Co-expression Network