G38414


Basic Information

Item Value
gene id G38414
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22195131 ~ 22205071 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51813
AAGAGGTGGTGGTGGCCATTTTGTTTTGGGAGGAGTGCCAATGAGAGGGAAAAAGTTTGCTTCAAACCTCTCAACCTCTAAGGAACTGATCCTTCAAGATGGTTTCTCTCACTGTTGTTCATGTGGCTGGACTCTGGACTCTGGAATATGGACTCTGGACTATGGGCTCTGGAATATGGACTCTGGACTCTGGAATATGGACTCTGGACTATGGACTGTACAGGAAATCAGGCATCTCTCTTCAAGGTAACAGTCCGAGCTGTCCACATGTATCGGCTCGACTCCTGAAATTCTTTCGGACAATATTACCTGCTCCATCCCCTGAAGAAGGTAGATGCTGACAGAGctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51813 True 349 lncRNA 0.48 2 22195131 22205071

Neighbor

gene id symbol gene type direction distance location
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900 coding downstream 294391 21881042 ~ 21900740 (-)
LOC103023948 LOC108443262 coding downstream 323629 21863489 ~ 21871502 (-)
LOC103032007 kat7,LOC108443263,LOC107708935,LOC107739754,LOC107598609,LOC107654043 coding downstream 353762 21828128 ~ 21841369 (-)
LOC103029147 LOC108443253 coding downstream 551104 21636090 ~ 21644027 (-)
LOC103040573 NA coding downstream 615364 21480761 ~ 21579767 (-)
LOC103046911 NA coding upstream 248716 22453787 ~ 22458181 (-)
pcdh15 pcdh15b,LOC108273410,LOC107695531,LOC107654051 coding upstream 282896 22487967 ~ 22923881 (-)
LOC111192391 LOC106675123,LOC107373546,LOC102213288,LOC106533383,LOC106676227,LOC106675084,LOC105893721 coding upstream 785659 22990730 ~ 22994904 (-)
ipmk ipmk,LOC107708928,LOC107695532,LOC108248332 coding upstream 1138238 23343309 ~ 23372501 (-)
slc16a9 slc16a9 coding upstream 1563901 23768972 ~ 23778550 (-)
G38376 NA non-coding downstream 141474 22053359 ~ 22053657 (-)
G38356 NA non-coding downstream 241913 21950551 ~ 21953218 (-)
G38344 ptges3l,si:ch211-131k2.3,LOC107653952 non-coding downstream 342794 21844063 ~ 21852337 (-)
G38342 NA non-coding downstream 354332 21839794 ~ 21840799 (-)
G38302 NA non-coding downstream 416221 21778652 ~ 21778910 (-)
G38421 NA non-coding upstream 89602 22294673 ~ 22354622 (-)
G38431 NA non-coding upstream 195058 22400129 ~ 22400519 (-)
G38490 NA non-coding upstream 276136 22481207 ~ 22481852 (-)
G38492 NA non-coding upstream 280400 22485471 ~ 22485845 (-)
G38502 NA non-coding upstream 409693 22614764 ~ 22618122 (-)
a1cf a1cf,LOC107654048 other downstream 156627 22013505 ~ 22038504 (-)
G38338 g6pc,g6pca.2,LOC107682718 other downstream 316754 21873320 ~ 21878377 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 1515700 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 2369479 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 2593847 19544225 ~ 19601284 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 1175574 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 1260148 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 1478055 23683126 ~ 23720782 (-)
G38791 NA other upstream 1626247 23831318 ~ 23960895 (-)
LOC111192423 pgap3,LOC107694083,LOC107684764 other upstream 2171605 24376676 ~ 24385379 (-)

Expression


Co-expression Network