pcdh15 (pcdh15b,LOC108273410,LOC107695531,LOC107654051)


Basic Information

Item Value
gene id pcdh15
gene name pcdh15b,LOC108273410,LOC107695531,LOC107654051
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 22487967 ~ 22923881 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669353.1
agctctctctatCACTATCTCTCTATCACTATCTCTCCCCGGCATGCGCTCTCTGTTCTCCGGCACTTTCACATCGTGGTGTGTATTGGAGGAGTATTTCCATGGCTTTGGGACTAAAACGGTGGGCATGCAGTAACGCTTGAGGAAGATGCGCCAGCGGTCGTGGCTCTTTAAATGGCTGGGAATAGGCATAGGAGTTCTTTTAGCTGCAGCTTTCTGCTCATCTCAGGACACAGACGACTGGCAGTATGAAGAGTGCAAGCTCTCCAGGACGGGTCCGCCGGCCACCATAGTCGCCATAGACGAGGAGAGCCCTAATGGTACTCTTCTGGTAGAGAACATGCAGATCAACGGACGAGCAGAAGATCCGGACAGAACTATCTCTTTATCCCTGAGAGACAACTATAACTACTGGGTCATCCTGGACCCGGTCAAACAGCGCCTTTACCTGAACAGCACCGGACGAGTTTTAGACCGAGATcCTCCATCCTACATTCACTCCATTGTGGTGCAGGTCCAGTGCACTAATGAACTGGTTGGCACGGTGATTCTCCACGAGGTACGGATTGTTGTGAGGGATCGAAATGACAACACCCCTCGCTTCCAGCAGCCTCGATACTACGTGGCCGTTAATGAGTTAACTCCAGTCGGCACCACCATCTTCTCTGGCTTTACTGGGAACAACGGAGCCACTGACATTGATGACGGACCGAACGGACAAATCGAGTACACTATTCAATACAATCCCAACGACCCGACTGCAAACAGGACATTTGACATCCCGCTCACCCTCTCCGGCTCCGTGGtcctgagagagagactcaACTACGAGGAGATCACACGCTACCTGATCATCATTCAGGCCAACGACCGGGCTCCTTACCCTAAAGACCGCCTGACTGCCACCACCACGCTGACTGTAGACGTGCTGGATGGAGATGACCTGGGTCCCATGTTCCTGCCGTGCAACCTGGTGGACAATACCCGCGACTGCAAGCCACTGACCTACAAAGCTACAGTCCTGGAGCTGGCAGACCCAAGCCGGGCCAACCCAGTAAACGTGACCCCTCCCATCCAGGCTGTGGATCAGGACCGGAACATCCAGCCTCCTTCTGGCCCAGGCATCGTCTACTCCATCCTCATAGGAAAACCTGTATCTTATGCAGACTACTTCTCCTTGAACAGCAGCACGGCCGAGCTGAGACTGCTGCAGCCCGTCAGCCGCGAGGAGCACCAGCGGTTCGACTTGGTGATCAAGGCGGAGCAGGACAATGGACATCCACTGCCAGCCTTTGCCAACCTCCACATTGAGGTTCTGGATGAGAATGACCAGGCGCCGTACTTCCAGGCACCATCCTACCACGGCTTTATCATGGAGTCTGCATCGGTGGGCACCACAATCTCCAGCAGTGCCAATCTCTCCTACCCTCTCACCATCATCGCTCTGGATAATGACGTGGAGGAGACCAAAGATCCCATGGTACGAATCTCCCTGGACAACTACGGCAGCATCTTTGCTGTGACACCCAGTGGGCTGGCGCGCTACCTGACACTTCTGAAGCCCGTGGACCGTGAAGAGCAGCAGAGTTATAGCTTCACAATGATCGCCTCAGACGGCATTCAGGAGAGCCCTCCAGTGACCGTTAATATCACGGTGATCGATGCCAACGACAACACACCCACCTTCCCCAACGTCTCCTACAGCGTCAATGTTTACACAGACATGCAGCCCGGGGAAACAGTATTACGGCTGACGGCGGTGGATGCTGATGAGGGTCCCAACGGGTTGATAAGCTACAGCATCCTGGCGGGGGCTCAGGGACACTTCACCATCAATAACCTCACTGGACTGATCACTGTGGTGCCCGGCGTGAACCTGACCGTGGGACGATCCTACGCCCTCACCGTGCGAGCTGCAGACAGCGGCCCGTCCTCACAGAGGAGGAGCTCCATCACCACTGTTTACATTGAGGTTCTCCCTCCCAACAACCAGAGTCCACCATGCTTCTCCCAGCTCCTCTACAGCCTGGAGATCAGCGAGGCCATGAGGACTGGAGCTACCATCCTCAACCTGCAGGCAACAGACCGTGAAAGAGATCCCATTACATACAGCATCCTGAGCGGTGATCCTGGCGCCATCATTGAAATCAACCAAACGTCTGGGCTGTTGCTGCTGGCGAAGATGCTGGACAGGGAGAGCACAGATCGCTACACGCTCACCATCACTGCATCCGACGGCAAGCTGGACGGGACCTCCACAGCCACCGTGGACATCCTGGTGACTGATGTCAACGATAACGACCCTGTGTTTGATCCTCTATTGCCCCACAATCTCACGGTTCAGGAGGAGCAGGCCAACGCTTTCGTGGGTCAAGTGAAGGCCACTGATCCCGACCTCGGGGTGAACGGTCAGGTGCGCTATAGGCTGCTGACCCACGCTGACCTCTTCCGCATCAGTGTGGATGGAAACATCTCCACAGCTGTGGCTCTGGACCGTGAGCAGAGGGGACACTACGAGCTGGTGGTGGAGGCCTGGGACGGAGCGCTGGACCCCCGCAGGACCACCCTCACACTCTCCATCAATGTGCTGGATGTAGACGACAACAGCCCTGTTTTCTCCCAGCCGTCCTACAGTGTAATCCTGCCTGAGAACAGCCCGGCGGGCGTGGCCATCCTCCAGCTCAGCgcaTCGGATGCAGACCTGAACTCCAACATCACGTACCTGATCCGGACCGAGGAGGAAAGGGAGCTGTTTGCGCTCGACCTCGTCacaggagagctgagagtgttGTATACACTGGACTTCGAGAAACTCACACCTGAGGAGACAACACACACCTTGGTGGTGGAGGCGGTAGACAGTGGGGGGAGCATGCCGCCTGGTTTGGCCACTGTGACTATCACCATAACGGACATGAACGACTTCTCGCCGGTGTTTGGCCAGACGGTGTACAGAGGCATGGTGGCACCCAATGCCGTCAAAGGGACCATCGTCACCACGGTGCAGGCTGAAGACTGGGACACGCCGggCACGCCAGCCAGCCGAGTGCACTACCAAGTGGACCTAGAGCAGTTCTTCTACAGTGCCAGCATTTTTGACGTGGATAAGGACACGGGCAGCATCCTCACCAGGGTCAACCTCAATGAGGAGCCCAACACCAAATTCAATCTGGCCGTTATTGCTTATGACAGTGGGGAGCCGGTGAAGTTCAATAAGACTCTGGTGGAAATTACCGTCCTGCAGCCCTCTGTCATCCCGGTCTTCACACAGGAGGAGTACAGGTTTCCTGCAGTCAGTGAGAACACTCCTGTAGGCACGGTGGTGGGGGTCATCCTTGCAGCTGCCATAAATCAGAGTATTGTCTACTCCATTGTGGAGGGGAATGAAGGAGGCGAATTCACTGTGAACAACCTGACCGGAGTCATCAGCACAGCCAGGCCACTGGACTACGAGACCAACAGCAGCTACGTCCTGCGGGTGGAGGCCGACTCTCTGAGGGTGTTCTCCTCCAACCAGCGGGCGCCTTCTAAAAGTAACACAGCTAAGGTGTACATCGAGGTGCAGGACGAGAACGACCACCCCCCAGTTTTCACCAAAATGTTCTATCTGGCTGGAGTCGCGGAGGATGCCAAAACCTTCACGTCTGTCCTGCAGGTCCAGGCTCTGGATAAAGACACAGGGAATTACAGTGCCATGCACTACCACCTCATCATCCCCCCGACGGCGGACGGAAAGGACAGCTTCGTGATTGAGCCGTACACAGGGGTCATCAAAACCGCCATCATGTACAGGAACATGCGCCGCTCCTACTTCAGGTTTGACGTCATCGCCACGGACAATTACGGCGAGGGGCTGAGCAGCAGTGCACAAGTGGTGGTATCTGTGGTGAACCAGCTGGACATGCAGGTGGTGGTGTCCAACGTCCCCCCTACCGTGGTGGAGCAGAACAAGGAGCAGCTGATTGGGATTCTAGAGCGCTACGTACAAGACCAGATCCCCGGTGCCAAGGTGGTGGTGGAGTCCATCGGGCCGCGGCGGTACGGAGACACGTACGACCAGGAAGATTACACCAAATCCGACCTCATGGTGTACGCCATAGACCCCATGACCAACAGAGCTCTCTCCAGACAGGAGCTGTTCAAGTTTCTGGATGGAAAGTTGCTGGACATCAACAAGGAGTTCCAGCCCTACCTGGGCCGAGGTGGACGCATCCTGGAGATCCGAACTCCTGACGTGGTTCAGAACGTGAAGAAAGCAGTGCAGTCAGTGGGCTACACAGAAGGAGCTCTGCTGGCCTTggccattatcatcatcatctgcTGCATCCCAGCCATCCTCATCGTCATTGTCACCTACCGACAATTTAAAGAGCGACAGGCCGAGTGTGCCAAAACCGCCAGGATCCAAATGGCTCTACCAGCTGGCAAACCCGGCGGCGTGGCCACCAGTAATCTGTACGAGGAACTGGGAGACGGCACCATGTCTAAGAATAAAAGGTGTGTTCTGGAGGAGGGCGACCGGCAACGGCTGATCAGTTCATTCGCCTCGCGTGCCATCTCAGCGCACAAGCAATCGACAGCTAATGGCATCCTGCTCAACAACCTCCCTCGATCTGAGAGTAACATCACCTTTCTTTCCGACGAGAACCCTCTGACCACCACCAACCCACTGTACCATGATGATGGCAGTGTCAGTAGCCCAGAGCATCTTGGGAAATCCCACTGGCGCCGGGAACTGCTGGGCTTGCACTCGCCTGGCATCAAGGGTCTGAAGAGTTTGCGCTTCCCATCCAGTAGATCGGGCCACTCATGGACGTTGCCTTCCAGGCTTCGGAAACGTGAGGCAAACGACGTCTTGCGCAACCGACAGGTGGTGATGGACCCTGTACAGTGGGAGCTGCAGCTTCTGAAGATGGAACTTAAGGACAGCAGGGAGCATCTTGATACTTTTGACGGCCTGGTGGATGAGGAATCTGAGCCCAAGCTGACAGTCAAGGAACAAGCCCGGCAATTTGAACAGCAAGCCCTGCAAGAGATGAGGCAGAAACAAGGACGGGACTCCCGTGGTTCCCTCTCTTCTGACTTCTTCCTCTCAACAGCCGATGGACCTCCATCCATTGTCGTGGGAATCGGGAGGGAAGGTGTCCCTCCAGCAATTATAATCACCCAGAGCGAGGGCACTCCACCACCAAGTCACAAGCCTACCCCACCAGGCTTGCGCAAATACGGCAACCTTGCTGCATTCTTTGGGGAGGAGGCCTACGAGGTCAACGTGGAGATAATCCCAGATCCTCCTGATGTCCCTGCGCCTCTTCCACCAACaactcctccacctccaccaccgccaccactaccaccacctcTGCCCACAGTCCCTCAATCTccttcctctcctccctctcctccctcCAGTCCTGCTCCAAACCCTGTTCCTcaaccaccaccaccaccacaacctCACCCCAGTCCTCCACCCCCTCCACCTCTCCCTCCACCCTCCTCCCCTGCTGCTCAAATCGCCTCCCCATTCGTCCTTCCTCCCTTACCCTCAGTAACATCCCTAAGACCGGTGTCCTTACGTCCCCCACCACCGCCCCTGCCGTCCGAGCAAGGGCCCCCCAAGAAAGAACTCAAAGGGATCCttaagaacatccagaacatAGCGGACATAGAGAAATCTGTTGCCAGCATGTACAGTCAAATAGACAAAAAGCAGCGGATACCAAAGACGGCACCAAAGCCTCAGGTGTCCTTGGAGTCGGAGACAGGTGAGCCAGAAGTGGAGCGCCTACAGGAACCAGAGAAGCGCATCAACCCAAACATGGACTCCCTTGTGGAAGAGCTGGAGAAACGCTTCCCATCTCAGTCCACCGTTCTgtgactctctctttctctgtctgtctctctcattccgTCTCTGTCTCCTTTTCCCTCATCTGTCTCTCCCATCTTTCAGTGACTTATTTGATATCCTCAGATatgttgtattgtttttactCAAGTCATTTTTACCACTATATTTTCACATTGCTGTCATGTCATGTATACTTTGCTCAAGATCTCATTCGCTTTTGAACATGGACCACATTTAACCAGTTCAGAGAGGCAAAGCTGTTACagtgaagaataaaaaaatgtgtttcatgATTTAGAGCAGTTGATTAGAGTGATTAGAGTGTTAGTCGATTTTGTACAGACACTAAATTACACTAAATGTCCAAAAGGACATATGCAGGAACCTGGACATCCTTTGTTATGTCTCAAAACAAGGGTAAGGATGGGGAGTTACTAAACTTTTACAACAGTTCTCAAACAGTTACAACCACTACAATCCCTAGTggaaatgttttataatgtaaagcatttaaaaaggcCACTCTAAAGTATCGAATATTGTGCTGGTGCCCCCTCATACAAACCATGTGTGTGTCCGCAAATGATCATACgtgaccctgtttttttttttacctggtcATTTCATATGTCTTAAGTAACAGAATTATACCTGGATAAGACCAAGCCACATGAAAAGGCGCACACCCAAGATGCATTTCAATCAAAAACAAACCTGATTACTCAAACTACTTTTAACATTTGTGACACATgtactatatacagtacatatagcCATATAAATGGATATATCACTTTAAGATGCATTTGCAGTTGGGTTGCAACTGAAAACCCAAGAAATAACTGCTGTGCAATGggctaatttgcatatttccaTCCTACATATCAGTCAAATTTCAGTTTGACTAACTAAAGATGCATTTGACTACCAAGTGCAAGTGTACTGTGTGTGGCTAAGGTTTAAAGTCCAGATACTAATCACATTAAGTGACCATGTATGAACATGGGTTTTTGTGATCAAGAAATGCACCTTAgtacctgtttacacctgggaTTAAGGGTAATAATTATTTTGCTCAACTGCTTTGTAGACCTTCCAATGCAGCCAGATAAATCAAATAACTGTTCTCATGATTCACTCTATATAACATAGTCTCCACTGCTCTAGAGTCCAGTGGCACCATGCTTTACACCACTGCACCATGATTTGCATTGCACTGTTTGGTGATGTAATGCTTGAATGGAGCTGTTCGGCCATGAAAACATGCCtaggtgttttgttttatatgctTGTGCCCACGGAAGTGGTACTTATAGTGTATTATAGCAcatacaatctttaaaataaaacacaaagcatgttaatgccaggtgtaaacaggctcTTGAAATAGCTGAATTCACTACTTATATAGGGGGTGTCTGCACACTTTGGACATTTAGTGTATTTCCTTGTCTATTGGACTTTTCTTATTCTCGTGCTCCTGAAAATTGGGTTATACTTTAGTCCTGCTGCACTGAATAAATGTCCTCCATAAAGCTTTTTGTTGAGTA

Function

symbol description
pcdh15b Predicted to enable calcium ion binding activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye development. Predicted to be located in plasma membrane and stereocilium. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; epiphysis; eye; and eye photoreceptor cell. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Orthologous to human PCDH15 (protocadherin related 15).

NR:

description
PREDICTED: protocadherin-15-like isoform X1

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0001654 eye development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16500 PCDH15, USH1F; protocadherin-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669353.1 True 7407 mRNA 0.52 37 22487967 22923881

Neighbor

gene id symbol gene type direction distance location
LOC103046911 NA coding downstream 29786 22453787 ~ 22458181 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900 coding downstream 587227 21881042 ~ 21900740 (-)
LOC103023948 LOC108443262 coding downstream 616465 21863489 ~ 21871502 (-)
LOC103032007 kat7,LOC108443263,LOC107708935,LOC107739754,LOC107598609,LOC107654043 coding downstream 646598 21828128 ~ 21841369 (-)
LOC103029147 LOC108443253 coding downstream 843940 21636090 ~ 21644027 (-)
LOC111192391 LOC106675123,LOC107373546,LOC102213288,LOC106533383,LOC106676227,LOC106675084,LOC105893721 coding upstream 66849 22990730 ~ 22994904 (-)
ipmk ipmk,LOC107708928,LOC107695532,LOC108248332 coding upstream 419428 23343309 ~ 23372501 (-)
slc16a9 slc16a9 coding upstream 845091 23768972 ~ 23778550 (-)
ccdc6 ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 coding upstream 862877 23786758 ~ 23821493 (-)
LOC111192394 NA coding upstream 958449 23882330 ~ 23904309 (-)
G38492 NA non-coding downstream 2122 22485471 ~ 22485845 (-)
G38490 NA non-coding downstream 6115 22481207 ~ 22481852 (-)
G38431 NA non-coding downstream 87448 22400129 ~ 22400519 (-)
G38421 NA non-coding downstream 133345 22294673 ~ 22354622 (-)
G38414 NA non-coding downstream 282896 22195131 ~ 22205071 (-)
G38520 NA non-coding upstream 16739 22940620 ~ 22940864 (-)
G38522 NA non-coding upstream 43030 22966911 ~ 22967205 (-)
G38525 NA non-coding upstream 44707 22968588 ~ 22970137 (-)
G38543 NA non-coding upstream 79333 23003214 ~ 23003510 (-)
G38563 NA non-coding upstream 232543 23156424 ~ 23156738 (-)
a1cf a1cf,LOC107654048 other downstream 449463 22013505 ~ 22038504 (-)
G38338 g6pc,g6pca.2,LOC107682718 other downstream 609590 21873320 ~ 21878377 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 1808536 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 2662315 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 2886683 19544225 ~ 19601284 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 456764 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 541338 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 759245 23683126 ~ 23720782 (-)
G38791 NA other upstream 907437 23831318 ~ 23960895 (-)
LOC111192423 pgap3,LOC107694083,LOC107684764 other upstream 1452795 24376676 ~ 24385379 (-)

Expression


Co-expression Network