LOC103043248 (col1a1b,LOC108444293,LOC108273947,LOC107708989)


Basic Information

Item Value
gene id LOC103043248
gene name col1a1b,LOC108444293,LOC108273947,LOC107708989
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19249148 ~ 19277687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669292.1
CGTGCGTTTAGGCAGTAGGGACGTATCCGCTCGGGTCTGGAttttgcgcacacacacacccacaggcCGGACCCAGCGTGCATGAGTGGAGCTAACCCGGGCTGCCCCCTTGCCTCAAAGAGTCTACATGTCTAACGTTTAGACATGTTCAGCTTTGTGGATGTTCGGTTAGGGCTGCTGCTCGCAGCAACAGCCCTCTTGGTGAGAGGACAAGGCGAGGATGATAGCCTGTTCGGTAGCTGTACGCTAGAAGGCCAGTCGTACAATGACAAGGATGTATGGAAACCTGAGCCCTGCCGGATTTGCGTCTGCGACAGCGGGACGGTCATGTGCGACGAGGTGATCTGCGAGGACACATCCGACTGTGCCAATCCAGAGATCCCCGATGGAGAATGCTGCCCTATCTGCCTCGACGaCGGACAAACCACAGACCCAATAATCCCGGTTGGACCCGTAGGACCAGTTGGACCTAACGGTGACCCGGGTCTCGAAGGTCTTCCTGGTAATGACGGCATCCCCGGACAGCCTGGACTTCCCGGACCTCCTGGCCCCCCTGGACCCCCTGGCCTTGGCGGAGGTTACCTGCCCCAGATCTCTTACGGCAGTGAGAAGTCCAGTGGCCCACCTGTCCCAGGACCCCCTGGCCCAATGGGTCCCCGTGGACCTCCCGGATCTGCAGGTTCTCCTGGTCCTCAAGGATTCACTGGTCCCCCTGGCGAGCCTGGTGAGCCTGGTGCATCTGGTCCCATGGGTCCTCGTGGCCCCAATGGTCCTCCTGGAAAGAACGGAGATGATGGTGAGGCTGGAAAAGCTGGTCGTCCTGGTGAGCGTGGAGCCGCTGGTCCTCAGgGAGCTCGTGGATTCCCCGGAACCCCTGGACTGCCCGGCATCAAGGGACACAGAGGTTTCCCAGGTCTAGATGGAGCCAAGGGAGATGCTGGTATTGCCGGACCCAAGGGAGAGGCTGGTTCACCTGGTGAGAACGGAGTTGCTGGTGCTATGGGTCCTCGTGGTCTGCCCGGTGAGAGAGGCCGTCCTGGACCTCCTGGCCCCTCTGGTGCTCGTGGTAACGATGGAAACTCTGGACCTGCTGGACCTCCTGGACCCACTGGCCCTTCTGGTCCCCCGGGATTCCCAGGTGGTGCTGGAGCTAAGGGAGAGACTGGCCCCGCTGGAGGACGTGGATCTGAGGGACCCCAGGGATCCCGTGGAGAGCCTGGTAACCCCGGacctgctggagctgctggtgctgctGGTCCTCCTGGTGCTGATGGTTCTCCTGGTGCCAAAGGATCTTCTgGTGCCGCTGGTATTGCTGGTGCTCCTGGTTTCCCTGGTGCTCGTGGACCTGCTGgaggtgctggagctgcaggTGCCCCTGGACCCAAGGGTAACACTGGTGATGCTGGAGCCCAAGGAGCCAAAGGAGAGCCCGGTCCTAAGGGAGAGTctGGCCCCGCTGGACCTCAGGGTCTTTCTGGACCTTCTGGTGAGGAGGGTAAGAGAGGTGCCCGTGGTGAGCCTGGTGGTGCTGGACCTCTTGGACCTCCTGGAGCTCGTGGCGCCCCCGGCAACCGTGGTTTCCCAGGAACCGATGGAGCTCCAGGCCCCAAGGGAGCCCCTGGTGAGCGCGGACCTAATGGACCTGCTGGATCTCAGGGAGCCACCGGAGAGCCTGGTCGCCCTGGAGAGCCTGGACTGCCTGGATCTAAGGGTATGACTGGTGCTCCTGGTTCTCCTGGACCTGATGGCAAGACTGGACCTACTGGTGCTCCTGGTCAGGATGGTGCAAGTGGACCCCCAGGACCTGCTGGATCTCGTGGTACCCCCGGAGTGATGGGATTCCCCGGACCTAAGGGAGCTGATGGTGAGAGTGGAAAGCCTGGTGAGAGAGGCGTCACTGGACCTACTGGTTCTGTTGGTGCCCCCGGCAAAGACGGTGATGTTGGTGCTCCTGGTGCTCCCGGACCTGCTGGACCTGCTGGAGAGAAGGGTGAGCAGGGAGGTGCTGGACCTTCTGGATTCCAGGGTCTGCCTGGAACTCAGGGTGCTACTGGTGAGGCTGGCAAGCCTGGTGAGCAGGGTCTGCCTGGTGAAGCTGGTGTTCCTGGACCTTCTGGCCCCAGAGGTGACAGAGGTCTGCCCGGTGAGCGCGGTGCCCCCGGCCCTGCTGGCCCCATTGGAGCTCGTGGTTCTACTGGACCTGCTGGTAACGACGGTGCTAGAGGAGAGcctggtgctgctggagctcctggTGGTGTTGGTCCCGCTGGTATGCAGGGAATGCCTGGAGAGCGTGGTGCTGGTGGTATGCCTGGAGCCAgaggagacagaGGTGATGCTGGACCCAAGGGCCCTGATGGTGCTGTTGGTAAGGATGGCGCCCGTGGCCCTGCTGGCGCCATTGGAGCCCCTGGACCCTCTGGTGCTCCTGGTGACAAGGGAGAGCCTGGTCCCGTTGGAACTGCCGGAGTAACTGGACCTCGTGGTTCTGCTGGTGAGCGTGGTGAGGTTGGTCCTCCTGGACCTGCTGGATTCGCTGGACCTCCTGGTGCAGCTGGTCAGCCCGGATCTAAGGGTGAGACTGGTGACTCTGGACCCAAAGGTGATGCCGGAGCTCCTGGACCTCCTGGACCTGTCGGCGGATCTGGACCTCAGGGCCCTGCTGGTGCTACCGGACCCAAGGGTGCTCGTGGTGGTGCCGGACCTCCTGGTGCTGCTGGTTTCCCTGGTGCTGCTGGTAGAGTTGGACCCCCTGGCCCCGCTGGTGCAGGCGGACCCCCTGGACCCACCGGACCTGCTGGCAAAGAGGGACAGAGAGGAGCTCGTGGTGAGAAGGGTGCACCCGGCCGTCCTGGTGAGATCGGAGGTGCTGGACCTCCCGGACCCCCCGGAGACAAGGGTTCCCCTGGCTCTGATGGAGCTCCAGGCCCCTCTGGTACTTCTGGACCTGCTGGTATGGCTGGAGCTAATGGTCTTGTGGGTCTGCCtggacagagaggagagagaggctTCTCAGGTCTTCCAGGACCTTCTGGAGAACCAGGAAAGCAGGGTGGCCCCGGAGCTGTTGGTGAACGTGGACCTCCTGGACCAATGGGACCTCCTGGACTGAGTGGAGCTACTGGTGAGGCTGGACGTGAGGGTAGCCCTGGTCATGATGGTGCTCCTGGTCGCGATGGCGCTCCTGGACCCAAGGGAGACCGTGGTGAGGCTGGACATGTTGGTGCTCCTGGAGCTCCCGGACCCCCTGGACCTCCCGGCCCCCTGGGTCCATCTGGAAAGACTGGTGATCGTGGAGAGGCTgGTCCTGCTGGCTCTGCTGGTCCTGCTGGTCCTGCTGGTGTTCGTGGTCCTTCTGGCCCTGCTGGTCCTCGTGGAGACAGAGGTGAGGCTGGAGAGACTGGAGACAGAGGCATGAAGGGACACCGTGGTCTCAGCGGCATGGCTGGACTCCCTGGACCCCCTGGCCCCCCTGGTGAGCACGGACCTGCTGGACCCACTGGCCCCGCTGGACCTCGTGGAGCCTCTGGCTCAAGCGGCCCCCCTGGTAAGGATGGAGTGAGTGGAATGCCTGGACCTGTTGGACCTCCTGGACCCCGTGGTCGTACTGGAGAGATGGGATCTGCTGGTGCTCCTGGTCTTCCCGGACCCCCAGGTCCTCCCGGACCTCCCGGTGTGGGCGAGCCCTTCCCCATCATGCCCCAGCAGGAGAAGGCCGCCGATCCCCTGCGCAGCTACAGAGCCGATGACGCCAGCGTGCGCGACCGCGACTCCGAGGTCGACACCACCCTCAAGTCCCTTAGCCAGAAGATTGAGAACATCCGCAGCCCCGAGGGAACCCAGAAGAACCCTGCCCGCATGTGCCGTGACCTCAGAATGTGCCACCCCGAATGGAAGAGCGGCTCCTACTTCGTGGACCCCAACCAGGGCTCTCCTCTGGACGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTACAGCCAACCCGTGGCAGCGTTCCTCTGAAGAACTGGTACCTCAGCAAGAACTTCCGCGAGAAGAAGCACATCTGGTTCGGAGAGTCCATGCCCGAGGGCTTCCAGTTCCAGTATGGCAGCGAGGGCTCTGATCCTGAGGATGTGAACATCCAGATGACCTTCATGCGCCTGATGTCCAACAAGGCGTCCCAGAACATCACCTACCACTGCAAGAACAGCATCGCCTACATGGACCAGGCCTCTGGCAACCTGAAGAAGGCTCTGCTCCTGCAGGGATCCAACGATGTGGAGATCAGGGCCGAGGGCAACAGCCGCTCCACCTACACAGTCAGCGAGGATGGCTGCACGtcacacactggCACATGGGGCAAGACAGTCATCGAGTATCAGACAGCGAAAACAACTCGCCTCCCCATCATTGACATCGCTCCTATGGACATTGGTGCTCCCGATCAGGAATTCGGTGTAGAAGTTGGCGCAGTCTGCTtcttgtaaaaacaaaaatctggacattaaaaaaaatgttgttttatttctaatGGTCATCTCCGAGTCTTTTTCTATGCATTAAACCCCCCCAAACAACTGTCATTCGGCTGCAGTCGGTCCACTGCTTACACTCGCGTCTGTGAGGATTGTGCTCGTTTCGTGATCTTGAGAGACATtctgcttttttctctttttttgaaaatgttttttgaggACCACTATGCCATCCAGCGTCAACATCACGGACACTTAGGGAGAATGATTTTTGGGTCACCTGGCAacaagaaaataatatataactgTGCTTGTAAGGTGTAAAATCACACACATCCCCCCCACCTTCTCAAAAAAACTGAGAAGAACCCAAACGGTAATGAAAATACTGGTgaatttttttgccttttttttaccaCTGCAGAAggacaatgaaaaaaacaactacGCTACGTGCTAATGTACCATTCTCTGGTGTTgaataaatctgaaaaatgaCCGTCAATTGTCTTGTTCTTCTAGCCAAGAAAGGGAAAGCATTGTGTGACATAAAACCAAAGGAAAAACTTGTAATGGCTACCTCAGAACAACCCAAAAAATCACCCAAAATACCTGTTGTGGGGTTTTTCGGGGGACTCCTTCCACGCCACACatactagctaactagctaactagcaaaACAAGTGAAAACAAGTGCTTGCTATAGCTGGCTAGCTAGAACACAAGTAACAGTCAGAAAAAAGGTGCTAATTTCCTGTGCAGGTCCTGACTGTGGTGTATATTGTGTCTGACACTCCTCTTActcattttctgtctttttttactGTCACTTGTGCTTTTGGGACCTGTTTGGTGCTAACTGTCAACTCGATGTCTTGTTGTCAATGTGATTCCTTTTTCCCATTAAAGTGTCAGCTGAGGGGAATAAAAAGCTGAATGTGACGGTTGCTTAAGATTTGCACTTAATCTGACGTGAGTTAAGTACGTGGACAGTTTGCCATTTTCTTATCCAAGGCTTTGCCCCGCCCCCTGCCCCCAACTGTTCATTCCCTCCACACACTCATACTGCAAAACTGCAATGCACACCTCCTttcatttttgcttttatttttattttttgttttttttgttttctttattttctaagaaaaaaaaaatgaaatgaggcggcacatgagaaaaaaagaccaaaaaccCACAAACGAGACACTTTAATGGTTTCAACCAGAGGATCTGTACTTATTTTGTACATGTATAATATTTcaagatgtttttaattattttggatGCTGAAATAAAGCATGTTTTAAGTGGTCACCTGAATGTTCGGCATGTTATCTTCTCGACCCCCACCGTTAAATTAAACGATCTATACTGCTTTCACTCA
>XM_022669293.1
CGTGCGTTTAGGCAGTAGGGACGTATCCGCTCGGGTCTGGAttttgcgcacacacacacccacaggcCGGACCCAGCGTGCATGAGTGGAGCTAACCCGGGCTGCCCCCTTGCCTCAAAGAGTCTACATGTCTAACGTTTAGACATGTTCAGCTTTGTGGATGTTCGGTTAGGGCTGCTGCTCGCAGCAACAGCCCTCTTGGTGAGAGGACAAGGCGAGGATGATAGCCTGTTCGGTAGCTGTACGCTAGAAGGCCAGTCGTACAATGACAAGGATGTATGGAAACCTGAGCCCTGCCGGATTTGCGTCTGCGACAGCGGGACGGTCATGTGCGACGAGGTGATCTGCGAGGACACATCCGACTGTGCCAATCCAGAGATCCCCGATGGAGAATGCTGCCCTATCTGCCTCGACGaCGGACAAACCACAGACCCAATAATCCCGGTTGGACCCGTAGGACCAGTTGGACCTAACGGTGACCCGGGTCTCGAAGGTCTTCCTGGTAATGACGGCATCCCCGGACAGCCTGGACTTCCCGGACCTCCTGGCCCCCCTGGACCCCCTGGCCTTGGCGGAGGTTACCTGCCCCAGATCTCTTACGGCAGTGAGAAGTCCAGTGGCCCACCTGTCCCAGGACCCCCTGGCCCAATGGGTCCCCGTGGACCTCCCGGATCTGCAGGTTCTCCTGGTCCTCAAGGATTCACTGGTCCCCCTGGCGAGCCTGGTGAGCCTGGTGCATCTGGTCCCATGGGTCCTCGTGGCCCCAATGGTCCTCCTGGAAAGAACGGAGATGATGGTGAGGCTGGAAAAGCTGGTCGTCCTGGTGAGCGTGGAGCCGCTGGTCCTCAGgGAGCTCGTGGATTCCCCGGAACCCCTGGACTGCCCGGCATCAAGGGACACAGAGGTTTCCCAGGTCTAGATGGAGCCAAGGGAGATGCTGGTATTGCCGGACCCAAGGGAGAGGCTGGTTCACCTGGTGAGAACGGAGTTGCTGGTGCTATGGGTCCTCGTGGTCTGCCCGGTGAGAGAGGCCGTCCTGGACCTCCTGGCCCCTCTGGTGCTCGTGGTAACGATGGAAACTCTGGACCTGCTGGACCTCCTGGACCCACTGGCCCTTCTGGTCCCCCGGGATTCCCAGGTGGTGCTGGAGCTAAGGGAGAGACTGGCCCCGCTGGAGGACGTGGATCTGAGGGACCCCAGGGATCCCGTGGAGAGCCTGGTAACCCCGGacctgctggagctgctggtgctgctGGTCCTCCTGGTGCTGATGGTTCTCCTGGTGCCAAAGGATCTTCTgGTGCCGCTGGTATTGCTGGTGCTCCTGGTTTCCCTGGTGCTCGTGGACCTGCTGgaggtgctggagctgcaggTGCCCCTGGACCCAAGGGTAACACTGGTGATGCTGGAGCCCAAGGAGCCAAAGGAGAGCCCGGTCCTAAGGGAGAGTctGGCCCCGCTGGACCTCAGGGTCTTTCTGGACCTTCTGGTGAGGAGGGTAAGAGAGGTGCCCGTGGTGAGCCTGGTGGTGCTGGACCTCTTGGACCTCCTGGAGCTCGTGGCGCCCCCGGCAACCGTGGTTTCCCAGGAACCGATGGAGCTCCAGGCCCCAAGGGAGCCCCTGGTGAGCGCGGACCTAATGGACCTGCTGGATCTCAGGGAGCCACCGGAGAGCCTGGTCGCCCTGGAGAGCCTGGACTGCCTGGATCTAAGGGTATGACTGGTGCTCCTGGTTCTCCTGGACCTGATGGCAAGACTGGACCTACTGGTGCTCCTGGTCAGGATGGTGCAAGTGGACCCCCAGGACCTGCTGGATCTCGTGGTACCCCCGGAGTGATGGGATTCCCCGGACCTAAGGGAGCTGATGGTGAGAGTGGAAAGCCTGGTGAGAGAGGCGTCACTGGACCTACTGGTTCTGTTGGTGCCCCCGGCAAAGACGGTGATGTTGGTGCTCCTGGTGCTCCCGGACCTGCTGGACCTGCTGGAGAGAAGGGTGAGCAGGGAGGTGCTGGACCTTCTGGATTCCAGGGTCTGCCTGGAACTCAGGGTGCTACTGGTGAGGCTGGCAAGCCTGGTGAGCAGGGTCTGCCTGGTGAAGCTGGTGTTCCTGGACCTTCTGGCCCCAGAGGTGACAGAGGTCTGCCCGGTGAGCGCGGTGCCCCCGGCCCTGCTGGCCCCATTGGAGCTCGTGGTTCTACTGGACCTGCTGGTAACGACGGTGCTAGAGGAGAGcctggtgctgctggagctcctggTGGTGTTGGTCCCGCTGGTATGCAGGGAATGCCTGGAGAGCGTGGTGCTGGTGGTATGCCTGGAGCCAgaggagacagaGGTGATGCTGGACCCAAGGGCCCTGATGGTGCTGTTGGTAAGGATGGCGCCCGTGGCCCTGCTGGCGCCATTGGAGCCCCTGGACCCTCTGGTGCTCCTGGTGACAAGGGAGAGCCTGGTCCCGTTGGAACTGCCGGAGTAACTGGACCTCGTGGTTCTGCTGGTGAGCGTGGTGAGGTTGGTCCTCCTGGACCTGCTGGATTCGCTGGACCTCCTGGTGCTGCTGGTTTCCCTGGTGCTGCTGGTAGAGTTGGACCCCCTGGCCCCGCTGGTGCAGGCGGACCCCCTGGACCCACCGGACCTGCTGGCAAAGAGGGACAGAGAGGAGCTCGTGGTGAGAAGGGTGCACCCGGCCGTCCTGGTGAGATCGGAGGTGCTGGACCTCCCGGACCCCCCGGAGACAAGGGTTCCCCTGGCTCTGATGGAGCTCCAGGCCCCTCTGGTACTTCTGGACCTGCTGGTATGGCTGGAGCTAATGGTCTTGTGGGTCTGCCtggacagagaggagagagaggctTCTCAGGTCTTCCAGGACCTTCTGGAGAACCAGGAAAGCAGGGTGGCCCCGGAGCTGTTGGTGAACGTGGACCTCCTGGACCAATGGGACCTCCTGGACTGAGTGGAGCTACTGGTGAGGCTGGACGTGAGGGTAGCCCTGGTCATGATGGTGCTCCTGGTCGCGATGGCGCTCCTGGACCCAAGGGAGACCGTGGTGAGGCTGGACATGTTGGTGCTCCTGGAGCTCCCGGACCCCCTGGACCTCCCGGCCCCCTGGGTCCATCTGGAAAGACTGGTGATCGTGGAGAGGCTgGTCCTGCTGGCTCTGCTGGTCCTGCTGGTCCTGCTGGTGTTCGTGGTCCTTCTGGCCCTGCTGGTCCTCGTGGAGACAGAGGTGAGGCTGGAGAGACTGGAGACAGAGGCATGAAGGGACACCGTGGTCTCAGCGGCATGGCTGGACTCCCTGGACCCCCTGGCCCCCCTGGTGAGCACGGACCTGCTGGACCCACTGGCCCCGCTGGACCTCGTGGAGCCTCTGGCTCAAGCGGCCCCCCTGGTAAGGATGGAGTGAGTGGAATGCCTGGACCTGTTGGACCTCCTGGACCCCGTGGTCGTACTGGAGAGATGGGATCTGCTGGTGCTCCTGGTCTTCCCGGACCCCCAGGTCCTCCCGGACCTCCCGGTGTGGGCGAGCCCTTCCCCATCATGCCCCAGCAGGAGAAGGCCGCCGATCCCCTGCGCAGCTACAGAGCCGATGACGCCAGCGTGCGCGACCGCGACTCCGAGGTCGACACCACCCTCAAGTCCCTTAGCCAGAAGATTGAGAACATCCGCAGCCCCGAGGGAACCCAGAAGAACCCTGCCCGCATGTGCCGTGACCTCAGAATGTGCCACCCCGAATGGAAGAGCGGCTCCTACTTCGTGGACCCCAACCAGGGCTCTCCTCTGGACGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTACAGCCAACCCGTGGCAGCGTTCCTCTGAAGAACTGGTACCTCAGCAAGAACTTCCGCGAGAAGAAGCACATCTGGTTCGGAGAGTCCATGCCCGAGGGCTTCCAGTTCCAGTATGGCAGCGAGGGCTCTGATCCTGAGGATGTGAACATCCAGATGACCTTCATGCGCCTGATGTCCAACAAGGCGTCCCAGAACATCACCTACCACTGCAAGAACAGCATCGCCTACATGGACCAGGCCTCTGGCAACCTGAAGAAGGCTCTGCTCCTGCAGGGATCCAACGATGTGGAGATCAGGGCCGAGGGCAACAGCCGCTCCACCTACACAGTCAGCGAGGATGGCTGCACGtcacacactggCACATGGGGCAAGACAGTCATCGAGTATCAGACAGCGAAAACAACTCGCCTCCCCATCATTGACATCGCTCCTATGGACATTGGTGCTCCCGATCAGGAATTCGGTGTAGAAGTTGGCGCAGTCTGCTtcttgtaaaaacaaaaatctggacattaaaaaaaatgttgttttatttctaatGGTCATCTCCGAGTCTTTTTCTATGCATTAAACCCCCCCAAACAACTGTCATTCGGCTGCAGTCGGTCCACTGCTTACACTCGCGTCTGTGAGGATTGTGCTCGTTTCGTGATCTTGAGAGACATtctgcttttttctctttttttgaaaatgttttttgaggACCACTATGCCATCCAGCGTCAACATCACGGACACTTAGGGAGAATGATTTTTGGGTCACCTGGCAacaagaaaataatatataactgTGCTTGTAAGGTGTAAAATCACACACATCCCCCCCACCTTCTCAAAAAAACTGAGAAGAACCCAAACGGTAATGAAAATACTGGTgaatttttttgccttttttttaccaCTGCAGAAggacaatgaaaaaaacaactacGCTACGTGCTAATGTACCATTCTCTGGTGTTgaataaatctgaaaaatgaCCGTCAATTGTCTTGTTCTTCTAGCCAAGAAAGGGAAAGCATTGTGTGACATAAAACCAAAGGAAAAACTTGTAATGGCTACCTCAGAACAACCCAAAAAATCACCCAAAATACCTGTTGTGGGGTTTTTCGGGGGACTCCTTCCACGCCACACatactagctaactagctaactagcaaaACAAGTGAAAACAAGTGCTTGCTATAGCTGGCTAGCTAGAACACAAGTAACAGTCAGAAAAAAGGTGCTAATTTCCTGTGCAGGTCCTGACTGTGGTGTATATTGTGTCTGACACTCCTCTTActcattttctgtctttttttactGTCACTTGTGCTTTTGGGACCTGTTTGGTGCTAACTGTCAACTCGATGTCTTGTTGTCAATGTGATTCCTTTTTCCCATTAAAGTGTCAGCTGAGGGGAATAAAAAGCTGAATGTGACGGTTGCTTAAGATTTGCACTTAATCTGACGTGAGTTAAGTACGTGGACAGTTTGCCATTTTCTTATCCAAGGCTTTGCCCCGCCCCCTGCCCCCAACTGTTCATTCCCTCCACACACTCATACTGCAAAACTGCAATGCACACCTCCTttcatttttgcttttatttttattttttgttttttttgttttctttattttctaagaaaaaaaaaatgaaatgaggcggcacatgagaaaaaaagaccaaaaaccCACAAACGAGACACTTTAATGGTTTCAACCAGAGGATCTGTACTTATTTTGTACATGTATAATATTTcaagatgtttttaattattttggatGCTGAAATAAAGCATGTTTTAAGTGGTCACCTGAATGTTCGGCATGTTATCTTCTCGACCCCCACCGTTAAATTAAACGATCTATACTGCTTTCACTCA

Function

symbol description
col1a1b Predicted to be an extracellular matrix structural constituent. Acts upstream of or within skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including integument; myoseptum; osteoblast; tendon; and trunk. Used to study osteogenesis imperfecta. Human ortholog(s) of this gene implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Orthologous to human COL1A1 (collagen type I alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(I) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669292.1 True 5860 mRNA 0.57 51 19249148 19277687
XM_022669293.1 False 5698 mRNA 0.57 49 19249148 19277687

Neighbor

gene id symbol gene type direction distance location
LOC103037098 LOC108425932 coding upstream 66901 19170742 ~ 19182247 (+)
LOC103042924 NA coding upstream 80066 19161544 ~ 19169082 (+)
LOC103023686 NA coding upstream 334592 18898912 ~ 18914556 (+)
trnag-ccc NA coding upstream 351776 18897302 ~ 18897372 (+)
LOC103036574 NA coding upstream 353297 18883895 ~ 18895851 (+)
rfng rfng,LOC106610281 coding downstream 15917 19293604 ~ 19311143 (+)
dcxr dcxr coding downstream 40025 19317712 ~ 19328823 (+)
LOC103044175 NA coding downstream 84134 19361821 ~ 19385854 (+)
fam20a fam20a coding downstream 113755 19391442 ~ 19418752 (+)
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding downstream 158674 19436361 ~ 19455353 (+)
G37735 NA non-coding upstream 34330 19214568 ~ 19214818 (+)
LOC111192409 NA non-coding upstream 285112 18963237 ~ 18964036 (+)
G37652 NA non-coding upstream 436197 18812739 ~ 18812951 (+)
G37592 NA non-coding upstream 608053 18589222 ~ 18641095 (+)
G37557 NA non-coding upstream 776575 18470159 ~ 18472573 (+)
G37751 NA non-coding downstream 64412 19342099 ~ 19342794 (+)
G37767 NA non-coding downstream 196935 19474622 ~ 19476578 (+)
G37862 NA non-coding downstream 379818 19657505 ~ 19658477 (+)
G37861 NA non-coding downstream 425561 19703248 ~ 19739691 (+)
G37882 NA non-coding downstream 463182 19740869 ~ 19741119 (+)
LOC103022762 NA other upstream 541420 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 872803 18371378 ~ 18376345 (+)
G37404 NA other upstream 1135222 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 1149169 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 1278149 17961940 ~ 17970999 (+)
G37749 NA other downstream 51681 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 203369 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 211212 19488899 ~ 19511441 (+)
G37943 NA other downstream 878041 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 1741482 21019169 ~ 21030797 (+)

Expression


Co-expression Network