slc35g1 (si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601)


Basic Information

Item Value
gene id slc35g1
gene name si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21142586 ~ 21144194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669335.1
ggtatttttcttaaaaacacaTAATATCCATGTTAGGGCTTTATTCTGCAACATAAAATACCCCTATTGTAAATCTTAAaattattagaattttttttttgcactgctctaatatagttattattttttgttttataaaaaaaatgtatttttaaattgtttttactgGCTTTTCTTTTCTGATTAACTACATATTAGCCCAGtgctaaaataatttctaataaTTTTAAGATCCTTTTCAGGTAAAGGGTTGCTATGATTTGAATCAAAGGTTAACACAGAGGTATTTTGTGTTGTAGAATAAAGCCCTGAAGTGGACATTATGGGTTTTTGagagaaataatgaaatattttttaacaatttcctttttttttttgtcattctgGCTAAAagattttaatcaaattaactTGTGTGGGTATGTATAAAAACTGCTTGTCCTGTTTTAAAGCACTGGGTTTATAGGGCCGCGTGGCATGCGAATCTACCTGTTCCTGAGAGGGTTTCTAGGCTCCAATGCGATGATCCTGCTGTACTATGCCGTGCTGCAGATGCCCCTGGCTGATGCCACCGTCATCATGTTTAGCAACCCCGTCTTCACGTCTCTGCTGGCCTGGATTTTCCTGAAGGAGCGCTGCACCATCTGGGATGTGGTCTTCACTGTGTTCACGCTTACCGGTGTCATCCTCATAGCCAGGCCTCCTTTTCTGTTTGGCGGAGAGCCAACGGGAATTGAGGGCGATTACACCAACCACATTAAGGGCACGGTGGCAGCCTTCGCTGGGGCCATCGGGGCAGCCTGCACTATGGTGATTCTGAGGAAGATGGGCAAAAACGTCCATTACTACCTTTCCACCTGGTACTATGCTGTGCTGGGCTTCATCGAGTGCATCGTGGCCTTGTTCATTATTGACGAGTGGACGATGCCGTCCTGCGGCTGGGACCGGTGGAACCTGATGGCTATCGGCATTCTGGGTATAGCTGGGCAGATGTTCCTGACCAAAGCTCTGCAAATCGAGAAGGCTGGCCCAGTAGCGCTCATGAGGACTATGGACGTGGTTCTGGCCTTCGTCCTGCAGTTCCTCTTCCTCAATCGCAGTCCAACCTGGTGGAGCGTCGGTGGAGCTCTGTGTGTGATCAGCAGTACCAGCGGCGTGGCGCTGAGAAAGTGGTACAACAGCAGCAGACAACAAACCTGAGCTCCACCTgagtttatacatttataatttttattgatAAAACTGAAAATGAGATATTGTGCACTAATTAGCTTTTTTGTAGCAACATTTTATATTCAAGGTCGTagaccagtcaaaagtttggatataccttttaatttagtgttttttatttatttattattttttttctacattaatgtaaatgaatactaaagtcatccagactatgagggaacacataaggaatcatgtagtaacttgaaAGTGTTAAACTAACCAAAATTATCTGGGGTGCTATTGACTTGCGCTTATCCTATGCAACAGAGGTAAGTCTTGCTCTTCTATTTCTgcggtggtcctgatgagagccagtttcatcatgatgtttttcatggtctttgtgactgcacttcagGATACTTCACag

Function

symbol description
si:ch211-197g18.2 Predicted to be involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC35G1 (solute carrier family 35 member G1).
slc35g1 Involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Located in endoplasmic reticulum membrane and plasma membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669335.1 True 1609 mRNA 0.42 1 21142586 21144194

Neighbor

gene id symbol gene type direction distance location
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 64685 21055568 ~ 21077901 (+)
cep55 NA coding upstream 98696 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 140575 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 145929 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 276801 20862649 ~ 20865785 (+)
LOC103044640 NA coding downstream 207997 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 286278 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 481407 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 680185 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 699771 21843965 ~ 21850981 (+)
G38093 NA non-coding upstream 2685 21131630 ~ 21139901 (+)
G38081 rbp4 non-coding upstream 58938 21044512 ~ 21083648 (+)
G38062 NA non-coding upstream 160823 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 267310 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 352460 20783931 ~ 20790126 (+)
G38101 NA non-coding downstream 127938 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 172909 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 177645 21321839 ~ 21322611 (+)
G38117 NA non-coding downstream 214945 21359139 ~ 21359560 (+)
G38120 LOC102799035,LOC103365053 non-coding downstream 220167 21364361 ~ 21369269 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 13822 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 111789 21019169 ~ 21030797 (+)
G37943 NA other upstream 984247 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1631145 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1657671 19481056 ~ 19484915 (+)
plce1 plce1,LOC107743958 other downstream 22374 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2603275 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2603377 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2603479 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2603581 23747775 ~ 23747847 (+)

Expression


Co-expression Network