dlx3 (dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903)


Basic Information

Item Value
gene id dlx3
gene name dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21625601 ~ 21629176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241520.3
TTCCACACAGCAGATCTTCACCACAGTCGGAGTAAACTCAGCTGAGGGAAGTTGGGAAGAGGAGCGCTCCAGGGATTTGCCCTCCTTACTGCATCCActtctgtttttcttcagtttacaaatatagtttttatatttaaagacatCGCAGGACACGGACATAAGAGTGGACACCAGCTTTTATtactctttttcttcctctttttatttcttctccTCAACTGATGATGAGTGGACCGACTTATGAGAGGAAGATACCCGGGATTTCTGCAGATCTGTCAGGCTCTATGAGCTGCCACCCGTCCTCCAAAGACTCCCCGACACTGCCGGAGTCTACAGCCACGGACATGGGCTACTACAGCGACTATTACTCGGGGCAGCCCTACCAGAGCCAGCCCATGACCTCCTACCCGCAGTTCAACATGTCCAGCATGGGGCCGGCGGGGCATTACCCCAGCAAGACAGAGTACCCCTACAGCCCGTCCTACAGGCAGTACGGCCACTACGGCAGGGAACTGCAGAGCCCTCCGCACAACACAGTAAAAGAAGAAGTGGAGACTGAAGTCCGGATGGTCAATGGGAAACCAAAGAAGATCCGCAAGCCTCGCACCATTTATTCCAGTTTTCAACTGGCAGCACTGCAGCGGCGCTTCCAGAAAGCCCAGTACCTGGCCCTGCCTGAAAGAGCAGAGCTGGCTGCACAACTCggtctcacacagacacagGTGAAAATATGGTTCCAGAACCGACGATCCAAGTTCAAGAAGCTGTACAAGAACGGCGAGATTCCTCTGGAGCACAGCCCAAACGCCAGCGACTCCATGGCCTGCAACTCGCCGCCCTCCCCGGCCATATGGGACAGTAACGCACACTCAGGACAGGTCGGCCGGGGCCAGGGCCCTCAGCCCCCTCTTAGCTCCACACCGCCCTCCTACCTGGAGGACTACAGTAGTCCCTGGTACCAGCAGGGATCGCATTTACAGCACCCAGGGGCCGTGCAGAGCCTGGGGGCGGTCTACTGATCCGCGGAGGGTCTACTGAACACCAGAAAAATGGACAGGACTTTTATGCAAGCAGACTGTTCGTAGTGGCTTCATGCAAAGTAGAGCCTAAAAGGGAAATAAGCTGAAATGAGGCATCTGGAGTCACAGCCGACGCTTCCTTCGACTGTTGCTGAATTCGTTTGACTTGAGTTGAACGCGTTCATGGGACTGCGACTGGCTTCATCTGTCGAGTTaagaaggagaaaaaggagaaggagaaggagaggaCGATGGATGACCATTCATGCTCGACTATTCAGATTAACATGAGCACATAGGCATATAGGTTAACCTATTATTTAAAGGACATTATGGCGTggtgttaaattattattttttgactAATTGCTCCcctttttattcatatttgttgttcttcttcttctttgtatttgtttgtttataatgtaacaaaagagaatagagataAAAATGAacctgaaaagaaaaagaaagaactgGTGCACCTACAGCGTGGGTGGCTATCCCGTGCTTCACAGACTCAGGACAATAATAAGTTATATATTGATTTGTACAAACCTATTGAAAGATGTagttgtgtatatatgtatgtttttaaatgcatcAGAACCACTAAAACTCTATTGTTTTTGGAGAgatacagtaaaacactgcGCAGTGGTGCCTGGAACCGTTTTTGTATTCCTGTAAGTAGTGCTTCTGTTGTAATGCTGTTAAAGTTGAATAAATGCAAAATGAACTcatgtttaaaaagctttaaaa

Function

symbol description
dlx3b Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including sensory organ development; skeletal system development; and trigeminal nerve development. Predicted to be located in nucleus. Is expressed in several structures, including ectoderm; neural plate; neurogenic field; pharyngeal arch; and presumptive structure. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 4 and trichodontoosseous syndrome. Orthologous to human DLX3 (distal-less homeobox 3).
dlx3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in epithelial cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including odontoblast differentiation; odontogenesis of dentin-containing tooth; and placenta development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in amelogenesis imperfecta type 4 and trichodontoosseous syndrome.

NR:

description
PREDICTED: homeobox protein DLX-3

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0051216 cartilage development biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09315 DLX3; homeobox protein DLX3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241520.3 True 1787 mRNA 0.48 3 21625601 21629176

Neighbor

gene id symbol gene type direction distance location
ace ace,LOC107653924,LOC107664635 coding upstream 151483 21430472 ~ 21474118 (+)
LOC103044640 NA coding upstream 272709 21352191 ~ 21352892 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding upstream 481407 21142586 ~ 21144194 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding upstream 547700 21055568 ~ 21077901 (+)
cep55 NA coding upstream 581711 21031902 ~ 21043890 (+)
LOC111192390 NA coding downstream 195203 21824379 ~ 21828127 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding downstream 214789 21843965 ~ 21850981 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding downstream 244136 21873312 ~ 21878213 (+)
sgms1 sgms1 coding downstream 309453 21938629 ~ 21950677 (+)
LOC103023313 NA coding downstream 330271 21959447 ~ 21984284 (+)
G38152 NA non-coding upstream 5041 21574862 ~ 21620560 (+)
G38155 NA non-coding upstream 17274 21583458 ~ 21608327 (+)
G38120 LOC102799035,LOC103365053 non-coding upstream 256332 21364361 ~ 21369269 (+)
G38117 NA non-coding upstream 266041 21359139 ~ 21359560 (+)
G38099 NA non-coding upstream 302990 21321839 ~ 21322611 (+)
G38169 NA non-coding downstream 57707 21686883 ~ 21693765 (+)
G38301 NA non-coding downstream 149482 21778658 ~ 21779093 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding downstream 198974 21828150 ~ 21841278 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding downstream 241246 21870422 ~ 21871536 (+)
G38314 NA non-coding downstream 252260 21881436 ~ 21882906 (+)
plce1 plce1,LOC107743958 other upstream 328778 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 496837 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 594804 21019169 ~ 21030797 (+)
G37943 NA other upstream 1467262 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2114160 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 2118293 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2118395 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2118497 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 2118599 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 2118701 23747877 ~ 23747949 (+)

Expression


Co-expression Network