LOC103023313


Basic Information

Item Value
gene id LOC103023313
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21959447 ~ 21984284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669446.1
GGGGAAGGTGAGAGACCAGCCTAAAACTACACAGAGTAaacttgttaatgatctcaaggcagcTAGGAGCACAGTCACTAAGAAAACCATTGAAGAATGGCTCGTAAAGCTGTCTGCTGTGGCCTCAGCAGTCTGGAGCTGGTGCTCATGGTTCTGTTCCTGCTGATGACTGGAATTGCAGTGGCGCTCATCACTGTGTTAGCCATCAACCTCAACTCCCAAACAGAGAAGCCAGAAGAACCCATTCCATCAATAAACCCGCCAAAGAACCCATATCTGATTGGACTGGGCCGAGCAGACTGCACTGGACCAGCGGCTGATGTGCCCTTGaTGGGCTACGCCAACCTGGAACAGACTGCAGGTGGGATCCACACTCGTCTGTTCAGCAGGGCCTTTATTGTGGACGATGGCAGTAAGAGGGTGGTGTTTGTGACTGCAGAAATAGGCATGATCTCCCAAAGACTGAGACTAGAGGTGCTGAAAGAGCTGGAGCTGAAGTACGGAGATCTCTACAGGCAAGACAACGTAATTCTgagtggaacacacacacactccggcCTGGCGGGCTATTTCCAGTACACACTCTTTATGATCACCAGTAAAGGTTATATCAAGTCATCTATCCAACCCATCGTCAATGGAATTGTGAAGAGCATTGACCTGGCGCATAGGAACATGAGGCCTGGAAGAATCTTCATAAATAAAGGAGAGCTTCTGGATAACACTCGCAACAGGAGTCCGCACTCGTACCTGAACAATCCTGAAGAGGAGCGAAAGCGATACAAACATGACACCGACAAGCAAGTTGTGACCCTGAAGTTTACAGATCTAGATGGAGACGGAGTAGGAATGCTCAgctGGTTTGCTGTTCATTCAGTCAGTATGCATGAAACCAATCATATGGTGAGCTCAGACAACCTCGGCTATGCTGCCTATCTGTTTGAGCAGGACAAAAACATAGGCTCTTTACCTGGGCAGGGTTTGTTTGTAGCAGCGTTAGCTTCTGCTAACAGTGGAGATGCGTCTCCTAACACTCGTGGTCCGTACTGTATAAATACGGGAGAGAGATGTGATTACCTCAACAGCTCCTGTCCCATTGGAGGGAGAGAAATGTGTCTTGCCTTTGGTCCAGGAAAAGATATGTTTGAAAGCACAAGAATTCTAGGAGAGAATATCTACAGGAAAACAAAGGAGCTGTATGGAAGTGCTGAGCAGGAGCTGCAGGGCAGCATCCATGCTGCTCATCAGTGGGTCAACATGACAGACGTCACGGTCCAGCTTGACTCCACCCATAGCGGTAAGACATGTAAACCAGCACTGGGCCACAGTTTTGCTGCAGGAACGACTGATGGAGGCGGAGCTCTCAACTTCACACAAGGGTCAGTTGAAGGAGATCTATTCTGGGATGGTATAAGGGATGCGcttATGAACAAGCCCTTCCCATGGCACCCAGCCATAGTGGACGTTCAGATGATCACCATCGGCTCACTGGCCCTAGTGGCAGTTCCAGGAGAAGTGACCACCATGTCAGGTAGAAGGATCAGAGAGGCTGTAAAACAGGAGCTGGAGAAGCAAAATGCCTTCACCAACCCGGAAGTTGTGGTTGCTGGTCTGTGCAATGtctacacacactacattacTACGTATGAGGAATACCAGGTGCAGCGCTATGAAGCAGCATCCACTATTTATGGTCCTCACACTCTCTCAGCCTACATCCAGCACTTCAGAGGCCTGGCCAGAGCCATAGCAGAGgGTAAAGTGGGGGAGCTGCCGAAGGGCCCTGAGCCTCCATTCTTCAGTAATCTCTTCTCTCTACTGCCAGAAGTACCTGTAGATAAAAGCCCAGGAAATACCACCTTCGGACAGGTGATCCAGCAGGTCGATCCTCTTTATAAAGTGGGTGAAGTTGCAACCGTCACTTTTGTTGCTGGAAACCCAAGAAACTCCGGGGACATGAGAGACAAGACCTTCATCACAGTGGAGAAGTTTCACAACAGCACCAGCACATGGGAGGTTGTTCATACAGATGCATCATGGGAAACCAGgTTTTACTGGATTAAGGGGACTGCTAATCAGAGTAATGCCACTGTGGAGTGGCACATCCCTCTCTCAGCAGAGTCCGGCGCCTACAGGATCCGACACTTCGGCCACTACAAACAGCGTGTGATATTTCCTGTGATCACTGCATACGAAGGATCTTCACACACGTTCAGAGTCACCAAAACACTCTATTCTCTATAACACTCTGTTCTCTGTAACACTGTTtagtctaaagccctatctggacgggattcgTTTTCACAGGAGGGTCCTCTGcgattttatttcacttttatttatattttattatctctgagtttcatcacctcacgTTCAAtgaaatagctatttgtccactgccacacaccataTTTACACTTTGAGCATGTGTCTCCATGGAGAtgcacgtaaacacaacagcgagtgcaaatggaggagctactgaaccaaTTCCTCAGTGTAGGAAATACAAATTTGCCCTAAACCTCAATAAATTGCTGAAGGTTGCTGAACTTAAGTGCTCCACGGCTATCATCACATTAGCCTAAAGAGGTGGTTTCGGTGCAGATATACTGAACCATTTTAATACCAATATATGATTAGTTTGCACTGTGAGAACACTTCTTTagatttgttattttaaccaaTTACAGACGTTTGAGGCAGGCTTACATCAACcatttaaacaatagaagaagaaaaagaagtggtgttgtgctgaaaggCCTGGCGCGTACAACAGGTTACActggtgatttctgtatctaccgtaactgtagattaaaggtttttaaattgtttgtaCTTATTCTGCCATGGGACCCACATGCacttaaaaggaaaaaaaaaaattcagaagaGAGGGCAAAAgagcagaattcagcacaacacctccaAATTGACAACACTTGTCAAATTAAAGACATTCTACAGGCTAATGTAGGTAAACTCCACCCACAGGTGCTAAAGACAGGACGTAGTATATAGTTCTGCAAAGCGCTGAATCCCTAAACTACAGTGTGAAACCAACACTTGCCTGACACAATGTGcagtataaaatgtaataaatacatcAACCTTGATTCACAGGGTCTACTTCCTTTGATACTATTCTTTTAAACTCTCTACTGCTTCTGAAATAATACTCAAGTTTCTTGGTTTAATGCTGTAACTATATTTGCTTCTtgagaaaaaaatgttgtacgcttttgctgtttaaatatttaacaagcTGATAATAAAATTCTGATAATTA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K12349 ASAH2; neutral ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669446.1 True 3298 mRNA 0.45 21 21959447 21984284

Neighbor

gene id symbol gene type direction distance location
sgms1 sgms1 coding upstream 8770 21938629 ~ 21950677 (+)
g6pc g6pc,g6pca.2,LOC106579337 coding upstream 81234 21873312 ~ 21878213 (+)
ptges3l ptges3l,si:ch211-131k2.3,LOC107653952 coding upstream 108466 21843965 ~ 21850981 (+)
LOC111192390 NA coding upstream 131320 21824379 ~ 21828127 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding upstream 330271 21625601 ~ 21629176 (+)
LOC103021762 asah2,LOC107598643 coding downstream 3520 21987804 ~ 22011805 (+)
LOC111192422 NA coding downstream 85963 22070247 ~ 22097898 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding downstream 113467 22097751 ~ 22350082 (+)
dkk1 dkk1 coding downstream 384492 22368776 ~ 22371487 (+)
LOC111192392 LOC108416223 coding downstream 1014395 22998679 ~ 23000623 (+)
G38324 NA non-coding upstream 22374 21909061 ~ 21937073 (+)
G38314 NA non-coding upstream 76541 21881436 ~ 21882906 (+)
G38310 LOC108443262,LOC108274343,LOC107695523,LOC107708934,LOC107654044,LOC107598610 non-coding upstream 87911 21870422 ~ 21871536 (+)
G38306 kat7,LOC108443263,LOC107695506,LOC107557320,LOC106579267 non-coding upstream 118169 21828150 ~ 21841278 (+)
G38301 NA non-coding upstream 180354 21778658 ~ 21779093 (+)
G38330 a1cf non-coding downstream 29215 22013499 ~ 22016473 (+)
G38375 NA non-coding downstream 69075 22053359 ~ 22053669 (+)
G38391 NA non-coding downstream 267865 22252149 ~ 22252642 (+)
G38392 NA non-coding downstream 294670 22278954 ~ 22327073 (+)
G38379 NA non-coding downstream 369225 22353509 ~ 22354614 (+)
plce1 plce1,LOC107743958 other upstream 662624 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 830683 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 928650 21019169 ~ 21030797 (+)
G37943 NA other upstream 1801108 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 2448006 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 1763185 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 1763287 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 1763389 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 1763491 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 1763593 23747877 ~ 23747949 (+)

Expression


Co-expression Network