RNA id: XM_007241520.3


Basic Information

Item Value
RNA id XM_007241520.3
length 1787
RNA type mRNA
GC content 0.48
exon number 3
gene id dlx3
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21625601 ~ 21629176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCACACAGCAGATCTTCACCACAGTCGGAGTAAACTCAGCTGAGGGAAGTTGGGAAGAGGAGCGCTCCAGGGATTTGCCCTCCTTACTGCATCCActtctgtttttcttcagtttacaaatatagtttttatatttaaagacatCGCAGGACACGGACATAAGAGTGGACACCAGCTTTTATtactctttttcttcctctttttatttcttctccTCAACTGATGATGAGTGGACCGACTTATGAGAGGAAGATACCCGGGATTTCTGCAGATCTGTCAGGCTCTATGAGCTGCCACCCGTCCTCCAAAGACTCCCCGACACTGCCGGAGTCTACAGCCACGGACATGGGCTACTACAGCGACTATTACTCGGGGCAGCCCTACCAGAGCCAGCCCATGACCTCCTACCCGCAGTTCAACATGTCCAGCATGGGGCCGGCGGGGCATTACCCCAGCAAGACAGAGTACCCCTACAGCCCGTCCTACAGGCAGTACGGCCACTACGGCAGGGAACTGCAGAGCCCTCCGCACAACACAGTAAAAGAAGAAGTGGAGACTGAAGTCCGGATGGTCAATGGGAAACCAAAGAAGATCCGCAAGCCTCGCACCATTTATTCCAGTTTTCAACTGGCAGCACTGCAGCGGCGCTTCCAGAAAGCCCAGTACCTGGCCCTGCCTGAAAGAGCAGAGCTGGCTGCACAACTCggtctcacacagacacagGTGAAAATATGGTTCCAGAACCGACGATCCAAGTTCAAGAAGCTGTACAAGAACGGCGAGATTCCTCTGGAGCACAGCCCAAACGCCAGCGACTCCATGGCCTGCAACTCGCCGCCCTCCCCGGCCATATGGGACAGTAACGCACACTCAGGACAGGTCGGCCGGGGCCAGGGCCCTCAGCCCCCTCTTAGCTCCACACCGCCCTCCTACCTGGAGGACTACAGTAGTCCCTGGTACCAGCAGGGATCGCATTTACAGCACCCAGGGGCCGTGCAGAGCCTGGGGGCGGTCTACTGATCCGCGGAGGGTCTACTGAACACCAGAAAAATGGACAGGACTTTTATGCAAGCAGACTGTTCGTAGTGGCTTCATGCAAAGTAGAGCCTAAAAGGGAAATAAGCTGAAATGAGGCATCTGGAGTCACAGCCGACGCTTCCTTCGACTGTTGCTGAATTCGTTTGACTTGAGTTGAACGCGTTCATGGGACTGCGACTGGCTTCATCTGTCGAGTTaagaaggagaaaaaggagaaggagaaggagaggaCGATGGATGACCATTCATGCTCGACTATTCAGATTAACATGAGCACATAGGCATATAGGTTAACCTATTATTTAAAGGACATTATGGCGTggtgttaaattattattttttgactAATTGCTCCcctttttattcatatttgttgttcttcttcttctttgtatttgtttgtttataatgtaacaaaagagaatagagataAAAATGAacctgaaaagaaaaagaaagaactgGTGCACCTACAGCGTGGGTGGCTATCCCGTGCTTCACAGACTCAGGACAATAATAAGTTATATATTGATTTGTACAAACCTATTGAAAGATGTagttgtgtatatatgtatgtttttaaatgcatcAGAACCACTAAAACTCTATTGTTTTTGGAGAgatacagtaaaacactgcGCAGTGGTGCCTGGAACCGTTTTTGTATTCCTGTAAGTAGTGCTTCTGTTGTAATGCTGTTAAAGTTGAATAAATGCAAAATGAACTcatgtttaaaaagctttaaaa

Function

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0051216 cartilage development biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09315 DLX3; homeobox protein DLX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51451 lncRNA upstream 5041 21574862 ~ 21620560 (+) True G38152
TU51455 lncRNA upstream 17274 21583458 ~ 21608327 (+) True G38155
TU51418 lncRNA upstream 256332 21364361 ~ 21369269 (+) True G38120
TU51413 lncRNA upstream 266041 21359139 ~ 21359560 (+) True G38117
TU51387 lncRNA upstream 302990 21321839 ~ 21322611 (+) True G38099
TU51471 lncRNA downstream 57707 21686883 ~ 21693765 (+) True G38169
TU51650 lncRNA downstream 149482 21778658 ~ 21779093 (+) True G38301
TU51658 lncRNA downstream 198974 21828150 ~ 21841278 (+) True G38306
TU51668 lncRNA downstream 241246 21870422 ~ 21871536 (+) True G38310
TU51673 lncRNA downstream 252260 21881436 ~ 21882906 (+) True G38314
XM_022669341.1 mRNA upstream 151483 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA upstream 151483 21453223 ~ 21474118 (+) False ace
XM_007231471.2 mRNA upstream 272709 21352191 ~ 21352892 (+) True LOC103044640
XM_022669336.1 mRNA upstream 328778 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA upstream 328778 21166568 ~ 21296823 (+) False plce1
XM_022669348.1 mRNA downstream 195203 21824379 ~ 21828127 (+) True LOC111192390
XM_022669347.1 mRNA downstream 214789 21843965 ~ 21850981 (+) True ptges3l
XM_007233994.3 mRNA downstream 244136 21873312 ~ 21878213 (+) True g6pc
XM_022669351.1 mRNA downstream 309453 21938629 ~ 21950677 (+) True sgms1
XM_022669446.1 mRNA downstream 330271 21959447 ~ 21984284 (+) True LOC103023313
XR_002649894.1 other upstream 330311 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 594804 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1467262 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2140686 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2293940 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 2118293 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2118395 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2118497 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2118599 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 2118701 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile