RNA id: trnar-ccu_1


Basic Information

Item Value
RNA id trnar-ccu_1
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnar-ccu_1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23747469 ~ 23747541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctccatagctcagtggACAGAGCGCTGGTCTCCTAAACCAGAGGTCGCGAGTTCGATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52086 lncRNA upstream 223599 23520932 ~ 23523870 (+) True G38633
TU52090 lncRNA upstream 223599 23520932 ~ 23523870 (+) False G38633
TU52091 lncRNA upstream 223599 23520932 ~ 23523870 (+) False G38633
TU52093 lncRNA upstream 224880 23520932 ~ 23522589 (+) False G38633
TU52095 lncRNA upstream 224880 23520932 ~ 23522589 (+) False G38633
TU52201 lncRNA downstream 30733 23778274 ~ 23845827 (+) True G38717
TU52193 lncRNA downstream 36424 23783965 ~ 23784746 (+) True G38710
TU52207 lncRNA downstream 82945 23830486 ~ 23951902 (+) True G38723
XR_002649910.1 lncRNA downstream 638195 24385736 ~ 24388302 (+) True LOC107197179
TU52345 lncRNA downstream 678905 24426446 ~ 24426725 (+) True G38832
XM_007235380.3 mRNA upstream 61911 23628687 ~ 23685558 (+) True phyhipl
XM_007235381.3 mRNA upstream 61911 23659130 ~ 23685558 (+) False phyhipl
XM_022669360.1 mRNA upstream 153427 23418853 ~ 23594042 (+) True bicc1
XM_022669361.1 mRNA upstream 153427 23418853 ~ 23594042 (+) False bicc1
XM_007235379.3 mRNA upstream 351091 23387980 ~ 23396378 (+) True tfam
XM_022669450.1 mRNA downstream 653577 24401118 ~ 24402659 (+) True LOC111192424
XM_022669371.1 mRNA downstream 884162 24631703 ~ 24648610 (+) True LOC111192396
XM_007235900.2 mRNA downstream 905088 24652629 ~ 24663580 (+) True LOC103037544
XM_007235895.3 mRNA downstream 949595 24697136 ~ 24713813 (+) True mto1
XM_007235893.2 mRNA downstream 983359 24730900 ~ 24744132 (+) True LOC103035992
XR_002649894.1 other upstream 2452179 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 2716672 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 3589130 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 4262554 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 4415808 19329368 ~ 19331661 (+) True G37749
trnar-ccu_2 other downstream 30 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 132 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 234 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 336 23747877 ~ 23747949 (+) True trnar-ccu_5
trnar-ccu_6 other downstream 438 23747979 ~ 23748051 (+) True trnar-ccu_6