RNA id: TU51173


Basic Information

Item Value
RNA id TU51173
length 357
RNA type TUCP
GC content 0.60
exon number 3
gene id G37943
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20155728 ~ 20158339 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccgtccagtctccgtctcatgtccagttccccatccagtctccgtctcatgtccagtctccgtcacctgtccagttccccgtccagtctcagtctcctgtccatttccccgtccagtctccgtctcctgtccagttccccgtccagtctcctgttttccccggcctctccctgccgccagcccccggggtttgtttttacgcgcctcgggagctgcgcgtttagggggaggtttctgtcacgcctgaccctgtttcctgtctgtcctcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgattttccattacctcatgtctcatttgtagctccacccctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51177 lncRNA upstream 58030 20099119 ~ 20099850 (+) True G37945
TU51167 lncRNA upstream 109065 20048414 ~ 20048815 (+) True G37940
TU51165 lncRNA upstream 130720 20026925 ~ 20027160 (+) True G37938
TU51164 lncRNA upstream 134534 20023141 ~ 20023346 (+) True G37937
TU51162 lncRNA upstream 151753 20005912 ~ 20006127 (+) True G37935
TU51185 lncRNA downstream 23237 20181576 ~ 20181834 (+) True G37950
TU51187 lncRNA downstream 33073 20191412 ~ 20191686 (+) True G37952
TU51204 lncRNA downstream 258534 20416873 ~ 20417180 (+) True G37969
TU51208 lncRNA downstream 287510 20445849 ~ 20545637 (+) True G37972
TU51212 lncRNA downstream 351340 20509679 ~ 20511186 (+) False G37974
XM_022669324.1 mRNA upstream 308560 19840306 ~ 19849320 (+) True LOC103042203
XM_015601372.2 mRNA upstream 423203 19708665 ~ 19734677 (+) False LOC103040580
XM_007233568.3 mRNA upstream 423203 19708666 ~ 19734677 (+) True LOC103040580
XM_007233567.3 mRNA upstream 423203 19708666 ~ 19734677 (+) False LOC103040580
XM_007233569.3 mRNA upstream 424995 19708666 ~ 19732885 (+) False LOC103040580
XM_007240489.3 mRNA downstream 135900 20294239 ~ 20299561 (+) True LOC103045523
XM_007232849.3 mRNA downstream 531327 20689666 ~ 20691726 (+) True LOC103030679
XM_007232850.3 mRNA downstream 543921 20702260 ~ 20708857 (+) True LOC103031004
XM_022669423.1 mRNA downstream 566712 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669328.1 mRNA downstream 641781 20800120 ~ 20811142 (+) True nt5m
TU51016 other upstream 672965 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 826219 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1260508 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 1781535 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 1781535 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 860830 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1008229 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 3589130 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 3589232 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 3589334 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile