RNA id: TU51208


Basic Information

Item Value
RNA id TU51208
length 515
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G37972
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20445849 ~ 20545637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgttccatagttaataggtaactaagcacactgtaaaaaataaattgttgagaaaactcaaaattttaCGGCAACATGATGCATCAAGATTTTTTAGTTCTGTCAACAACTGTGctgtttgtcatttttataGAGAATTATCTGTTTAGCCAACTTATATTTGCTTGTCGACATAGATCTGATTATTCTGTTCAAGCTATTACAATCTTAATGTTAGGAGAACTACAATATTTCTGTTGAGCGTgtgattgtttttgtgtttgttatacAAAGAATTACTGATAAGCAGAACGCAAAatcttaactttaaaaaaaaaaaaaaaaaaagatgttgaaCGAACTGAATATTTTAAGGCAACATGATGcattaggatttttttgttgtctttatTAAAGATATTTGGTTTAGCCGACTGTTCACTCAACCAGTACATCTTTCCTATATAACAAGCATCCTGCATGTAATactacattaaaacattaagtacatagaaaaaacaatcaaatattaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51204 lncRNA upstream 28669 20416873 ~ 20417180 (+) True G37969
TU51187 lncRNA upstream 254163 20191412 ~ 20191686 (+) True G37952
TU51185 lncRNA upstream 264015 20181576 ~ 20181834 (+) True G37950
TU51170 lncRNA upstream 287510 20155728 ~ 20158339 (+) True G37943
TU51177 lncRNA upstream 345999 20099119 ~ 20099850 (+) True G37945
TU51267 lncRNA downstream 238294 20783931 ~ 20790126 (+) True G38010
TU51327 lncRNA downstream 329159 20874796 ~ 20875276 (+) True G38059
TU51331 lncRNA downstream 357440 20903077 ~ 20981763 (+) True G38062
TU51364 lncRNA downstream 498875 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 498875 21044512 ~ 21083648 (+) False G38081
XM_007240489.3 mRNA upstream 146288 20294239 ~ 20299561 (+) True LOC103045523
XM_022669324.1 mRNA upstream 596529 19840306 ~ 19849320 (+) True LOC103042203
XM_007233568.3 mRNA upstream 711172 19708666 ~ 19734677 (+) True LOC103040580
XM_007232849.3 mRNA downstream 144029 20689666 ~ 20691726 (+) True LOC103030679
XM_007232850.3 mRNA downstream 156623 20702260 ~ 20708857 (+) True LOC103031004
XM_022669423.1 mRNA downstream 179414 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669328.1 mRNA downstream 254483 20800120 ~ 20811142 (+) True nt5m
XM_007232853.2 mRNA downstream 317012 20862649 ~ 20865785 (+) True med9
TU51173 other upstream 287510 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 960934 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1114188 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1548477 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2069504 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 473532 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 620931 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 3201832 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 3201934 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 3202036 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile