RNA id: TU51204


Basic Information

Item Value
RNA id TU51204
length 308
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G37969
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20416873 ~ 20417180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgatgggcagtgctgcaccGCGGGCTGCCAGCAGGGGGACTGGTAGAAATGGTAGAGTGGGATCCCAAatctccaactcccagaatccccgGCGGTGATTAGTGTCAACCAGCTGCACATGTGCACTACCCTATTTAAACCTCAGTCAAACCAGACCTCACTGTTGCACCTTCACTGAGGGGTGACCGGTACTAGAGggtataagaaaagaaaagaaaagaaaagagaataaaataaaaggtgatCTCAAAAAAGGAAAGTGATCACAGCAAGcatcacaaaaagaaaataaaagaaaaaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51187 lncRNA upstream 225187 20191412 ~ 20191686 (+) True G37952
TU51185 lncRNA upstream 235039 20181576 ~ 20181834 (+) True G37950
TU51170 lncRNA upstream 258534 20155728 ~ 20158339 (+) True G37943
TU51177 lncRNA upstream 317023 20099119 ~ 20099850 (+) True G37945
TU51167 lncRNA upstream 368058 20048414 ~ 20048815 (+) True G37940
TU51208 lncRNA downstream 28669 20445849 ~ 20545637 (+) True G37972
TU51212 lncRNA downstream 92499 20509679 ~ 20511186 (+) False G37974
TU51221 lncRNA downstream 92499 20509679 ~ 20511186 (+) True G37974
TU51267 lncRNA downstream 366751 20783931 ~ 20790126 (+) True G38010
TU51327 lncRNA downstream 457616 20874796 ~ 20875276 (+) True G38059
XM_007240489.3 mRNA upstream 117312 20294239 ~ 20299561 (+) True LOC103045523
XM_022669324.1 mRNA upstream 567553 19840306 ~ 19849320 (+) True LOC103042203
XM_015601372.2 mRNA upstream 682196 19708665 ~ 19734677 (+) False LOC103040580
XM_007232849.3 mRNA downstream 272486 20689666 ~ 20691726 (+) True LOC103030679
XM_007232850.3 mRNA downstream 285080 20702260 ~ 20708857 (+) True LOC103031004
XM_022669423.1 mRNA downstream 307871 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669328.1 mRNA downstream 382940 20800120 ~ 20811142 (+) True nt5m
XM_007232853.2 mRNA downstream 445469 20862649 ~ 20865785 (+) True med9
TU51173 other upstream 258534 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 931958 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1085212 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1519501 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2040528 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 601989 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 749388 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 3330289 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 3330391 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 3330493 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile