G38081 (rbp4)


Basic Information

Item Value
gene id G38081
gene name rbp4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21044512 ~ 21083648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51362
tacaatacaatcatTCTACTTTGATGTTTCATCATGCAATACACATTACacttttttggtaccactttaaaataaggctaatttataaaggatttataaatagtttataatggtcatagtttatttatagttattaattagattgtaaatatttttaaaatattaataagcagttataacacatgaaCAGTTTTTATTCTCTTTCATACTGCTTAATCCTCAGATCTTTCTGGGTgctgatcttactttgtcttttccatcagtcagcatctCTAACACATCTCtaaataactttattcatttaactctACAGATGAATTATTTATCCAGTCATCGTAATGTGATGTATACGGACATATTTAAttgactaaactgactttctaaGACAAGTAAAATAAGAATCCAGAAAGATCTGAGGGtttcaaataaatgtataaatccCTATTTGGCAACCTGAGGCCTCAGACTCctttattaactatttataaaccctttataaatgagCTTTATGTAAAGACGGTCATGTTTTTCAGCCACACTCAACTCATTCAGTCCTAGGTAGATGTGCTAGTGGATTACTTTAAGatgaatatatatacacagaagtAAAAAATATGAAAGTTTACATTCTTGCTAGTCTCTGAGCAGGGTTGTTTCAGATACAgaaacctggaaaaaaaaacagacacaaatgGTTAGAGTTATCCAATTCATATACATTAAAGTCAATACAATTATATGtcataataatatacatatacaatgtGAAAAGCACTATTTAATGgtttagaattattattttactgctaCAGTTTGTATTTAATCGAGCTACACTATAGCTAAGTTGTAAAACACATGACAAAGAGAGTGAcatagagagaaaaacagaataatCTGTACCGTTGTGAGCAACCCTCCTGTATTTGCCCAGGAAGCAGAGTTCCTGTTTCTTCTGGGTCACGATCTGCTGGTCCTCGGGCCTCAGACCAGTGGGATGACGGGAGAAAACAAAGGAGTAGCCGTCCAGGCAGGTGCCATCAGTTTCCAGCTCCCTGCAGGAATAGTGTATGGCGTAGTTGTCGTAGTCTGTGTCAACGACCCAGTGGTCATCATCCAGTCTGGAGATAAGCAGCTGCACCCCAGTATCTGAGCTTGAACTTGGCAGGGTCGGGAGTCTCCTCTAAGGATCCGAACATGTTGGCACAGGTCTCCCAGTTgctaaagaataaaaataaataaataagaaagaaTAGTTATCATTGTGATAAAATCTAAAGGGCTCCAATGATTAATACTAAATCTATTCAGCAAAATTGTGTGGTTATtggtgttaaatcaacactattagtaattgttttaatagtgttgatttaacactggcaaattcACTCTGTAGAAACAATGACTGAACAGAACCATTCTTGGACTTACTTGAGGATGACGACTCTGCCAACAGCGGTGGCTGTCATTTTGCCATCCTCCTCCACTTGGTAGCTGGCGACAACATTATCCAGCAGGAAAAGTCCCACTGGGTCTTTTTTGGCTACAGCATACCATGTTCCTTGGAACTGCAAGAGAAATTAATGAATGTTCATATTCAGAAAGCCATGCACGGTGGATTAAATTGAGGAACATTACTCACCCTGTATTTATCAAAGTTCTCTTTTACTGGGATGCTGCTGACCACACATTCTTGTGCCCAGCCTGTTGCCAGGATGCACATCAACCCCACGAACCGTAACATGttgtctttttctgtctgcAAAAACACAACCAGCGTTTAGAACtggaaaaatacttaaaaaaaaaaaaaagcaacaaaacagGATAATCTTCTAGAAAGATCTAGACCTAAAACGATGACATGCAATAGTAAGTGAGTTTGTGTTTTTCCAGATTCCGAAGATTCCAGATGTTTTCTTAAAAGTTACaaaatcccttttttttttaaatcatacctCTGTGAGCCGTGCCAGATGAGAACGAGTGCAGCCCTCTGACTTGTTTGTTACAGATGGAGCTTATATACTGCTTCTGCCTGCTTCCAACAATTTCGCAATCCCACTTTCCAAACCGTTTCCCCCAGTCTTTTTTCATtgggctgtgtttttttttttttttacataacagCAGGAGTCTCATGTGTCCAACAAAAC
>TU51364
TCACTTTTATTTCAAAGTCATAGAagctacaatacaatacaatcatTCTACTTTGATGTTTCATCATGCAATACACATTACacttttttggtaccactttaaaataaggctaatttataaaggatttataaatagtttataatggtcatagtttatttatagttattaattagattgtaaatatttttaaaatattaataagcagttataacacatgaaCAGTTTTTATTCTCTTTCATACTGCTTAATCCTCAGATCTTTCTGGGTgctgatcttactttgtcttttccatcagtcagcatctCTAACACATCTCtaaataactttattcatttaactctACAGATGAATTATTTATCCAGTCATCGTAATGTGATGTATACGGACATATTTAAttgactaaactgactttctaaGACAAGTAAAATAAGAATCCAGAAAGATCTGAGGGtttcaaataaatgtataaatccCTATTTGGCAACCTGAGGCCTCAGACTCctttattaactatttataaaccctttataaatgagCTTTATGTAAAGACGGTCATGTTTTTCAGCCACACTCAACTCATTCAGTCCTAGGTAGATGTGCTAGTGGATTACTTTAAGatgaatatatatacacagaagtAAAAAATATGAAAGTTTACATTCTTGCTAGTCTCTGAGCAGGGTTGTTTCAGATACAgaaaccGTGAGCAACCCTCCTGTATTTGCCCAGGAAGCAGAGTTCCTGTTTCTTCTGGGTCACGATCTGCTGGTCCTCGGGCCTCAGACCAGTGGGATGACGGGAGAAAACAAAGGAGTAGCCGTCCAGGCAGGTGCCATCAGTTTCCAGCTCCCTGCAGGAATAGTGTATGGCGTAGTTGTCGTAGTCTGTGTCAACGACCCAGTGGTCATCATATCCAGTCTGGAGATAAGCAGCTGCACCCCAGTATCTGAGCTTGAACTTGGCAGGGTCGGGAGTCTCCTCTAAGGATCCGAACATGTTGGCACAGGTCTCCCAGTTgTTGAGGATGACGACTCTGCCAACAGCGGTGGCTGTCATTTTGCCATCCTCCTCCACTTGGTAGCTGGCGACAACATTATCCAGCAGGAAAAGTCCCACTGGGTCTTTTTTGGCTACAGCATACCATGTTCCTTGGAACCTGTATTTATCAAAGTTCTCTTTTACTGGGATGCTGCTGACCACACATTCTTGTGCCCAGCCTGTTGCCAGGATGCACATCAACCCCACGAACCGTAACATGttgtctttttctgtctCTGTGAGCCGTGCCAGATGAGAACGAGTGCAGCCCTCTGACTTGTTTGTTACAGATGGAGCTTATATACTGCTTCTGCCTGCTTCCAACAATTTCGCAATCCCACTTTCCAAACCGTTTCCCCCAGTCTTTTTTCATtgggctgtgtttttttttttttttacataacagCAGGAGTCTCATGTGTCCAACAAAAC
>TU51365
TCACTTTTATTTCAAAGTCATAGAagctacaatacaatacaatcatTCTACTTTGATGTTTCATCATGCAATACACATTACacttttttggtaccactttaaaataaggctaatttataaaggatttataaatagtttataatggtcatagtttatttatagttattaattagattgtaaatatttttaaaatattaataagcagttataacacatgaaCAGTTTTTATTCTCTTTCATACTGCTTAATCCTCAGATCTTTCTGGGTgctgatcttactttgtcttttccatcagtcagcatctCTAACACATCTCtaaataactttattcatttaactctACAGATGAATTATTTATCCAGTCATCGTAATGTGATGTATACGGACATATTTAAttgactaaactgactttctaaGACAAGTAAAATAAGAATCCAGAAAGATCTGAGGGtttcaaataaatgtataaatccCTATTTGGCAACCTGAGGCCTCAGACTCctttattaactatttataaaccctttataaatgagCTTTATGTAAAGACGGTCATGTTTTTCAGCCACACTCAACTCATTCAGTCCTAGGTAGATGTGCTAGTGGATTACTTTAAGatgaatatatatacacagaagtAAAAAATATGAAAGTTTACATTCTTGCTAGTCTCTGAGCAGGGTTGTTTCAGATACAgaaaccGTGAGCAACCCTCCTGTATTTGCCCAGGAAGCAGAGTTCCTGTTTCTTCTGGGTCACGATCTGCTGGTCCTCGGGCCTCAGACCAGTGGGATGACGGGAGAAAACAAAGGAGTAGCCGTCCAGGCAGGTGCCATCAGTTTCCAGCTCCCTGCAGGAATAGTGTATGGCGTAGTTGTCGTAGTCTGTGTCAACGACCCAGTGGTCATCATCCAGTCTGGAGATAAGCAGCTGCACCCCAGTATCTGAGCTTGAACTTGGCAGGGTCGGGAGTCTCCTCTAAGGATCCGAACATGTTGGCACAGGTCTCCCAGTTgctaaagaataaaaataaataaataagaaagaaTAGTTATCATTGTGATAAAATCTAAAGGGCTCCAATGATTAATACTAAATCTATTCAGCAAAATTGTGTGGTTATtggtgttaaatcaacactattagtaattgttttaatagtgttgatttaacactggcaaattcACTCTGTAGAAACAATGACTGAACAGAACCATTCTTGGACTTACTTGAGGATGACGACTCTGCCAACAGCGGTGGCTGTCATTTTGCCATCCTCCTCCACTTGGTAGCTGGCGACAACATTATCCAGCAGGAAAAGTCCCACTGGGTCTTTTTTGGCTACAGCATACCATGTTCCTTGGAACTGCAAGAGAAATTAATGAATGTTCATATTCAGAAAGCCATGCACGGTGGATTAAATTGAGGAACATTACTCACCCTGTATTTATCAAAGTTCTCTTTTACTGGGATGCTGCTGACCACACATTCTTGTGCCCAGCCTGTTGCCAGGATGCACATCAACCCCACGAACCGTAACATGttgtctttttctgtctgcAAAAACACAACCAGCGTTTAGAACtggaaaaatacttaaaaaaaaaaaaaaaagaaaaaaaaca
>TU51366
TCACTTTTATTTCAAAGTCATAGAagctacaatacaatacaatcatTCTACTTTGATGTTTCATCATGCAATACACATTACacttttttggtaccactttaaaataaggctaatttataaaggatttataaatagtttataatggtcatagtttatttatagttattaattagattgtaaatatttttaaaatattaataagcagttataacacatgaaCAGTTTTTATTCTCTTTCATACTGCTTAATCCTCAGATCTTTCTGGGTgctgatcttactttgtcttttccatcagtcagcatctCTAACACATCTCtaaataactttattcatttaactctACAGATGAATTATTTATCCAGTCATCGTAATGTGATGTATACGGACATATTTAAttgactaaactgactttctaaGACAAGTAAAATAAGAATCCAGAAAGATCTGAGGGtttcaaataaatgtataaatccCTATTTGGCAACCTGAGGCCTCAGACTCctttattaactatttataaaccctttataaatgagCTTTATGTAAAGACGGTCATGTTTTTCAGCCACACTCAACTCATTCAGTCCTAGGTAGATGTGCTAGTGGATTACTTTAAGatgaatatatatacacagaagtAAAAAATATGAAAGTTTACATTCTTGCTAGTCTCTGAGCAGGGTTGTTTCAGATACAgaaaccGTGAGCAACCCTCCTGTATTTGCCCAGGAAGCAGAGTTCCTGTTTCTTCTGGGTCACGATCTGCTGGTCCTCGGGCCTCAGACCAGTGGGATGACGGGAGAAAACAAAGGAGTAGCCGTCCAGGCAGGTGCCATCAGTTTCCAGCTCCCTGCAGGAATAGTGTATGGCGTAGTTGTCGTAGTCTGTGTCAACGACCCAGTGGTCATCATCCAGTCTGGAGATAAGCAGCTGCACCCCAGTATCTGAGCTTGAACTTGGCAGGGTCGGGAGTCTCCTCTAAGGATCCGAACATGTTGGCACAGGTCTCCCAGTTgctaaagaataaaaataaataaataagaaagaaTAGTTATCATTGTGATAAAATCTAAAGGGCTCCAATGATTAATACTAAATCTATTCAGCAAAATTGTGTGGTTATtggtgttaaatcaacactattagtaattgttttaatagtgttgatttaacactggcaaattcACTCTGTAGAAACAATGACTGAACAGAACCATTCTTGGACTTACTTGAGGATGACGACTCTGCCAACAGCGGTGGCTGTCATTTTGCCATCCTCCTCCACTTGGTAGCTGGCGACAACATTATCCAGCAGGAAAAGTCCCACTGGGTCTTTTTTGGCTACAGCATACCATGTTCCTTGGAACTGCAAGAGAAATTAATGAATGTTCATATTCAGAAAGCCATGCACGGTGGATTAAATTGAGGAACATTACTCACCCTGTATTTATCAAAGTTCTCTTTTACTGGGATGCTGCTGACCACACATTCTTGTGCCCAGCCTGTTGCCAGGATGCACATCAACCCCACGAACCGTAACATGttgtctttttctgtctAAACGATGACATGCAATAGTAAGTGAGTTTGTGTTTTTCCAGATTCCGAAGATTCCAGATGTTTTCTTAAAAGTTACaaaatcccttttttttttaaatcatacctCTGTGAGCCGTGCCAGATGAGAACGAGTGCAGCCCTCTGACTTGTTTGTTACAGATGGAGCTTATATACTGCTTCTGCCTGCTTCCAACAATTTCGCAATCCCACTTTCCAAACCGTTTCCCCCAGTCTTTTTTCATtgggctgtgtttttttttttttttacataacagCAGGAGTCTCATGTGTCCAACAAAAC

Function

symbol description
rbp4 Predicted to enable retinol binding activity. Acts upstream of or within liver development and response to retinoic acid. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; digestive system; integument; reproductive system; and yolk. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human RBP4 (retinol binding protein 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51362 True 2156 lncRNA 0.37 2 21044544 21048104
TU51364 False 1470 lncRNA 0.40 6 21044512 21048104
TU51365 False 1625 lncRNA 0.37 4 21044512 21083648
TU51366 False 1861 lncRNA 0.38 4 21044512 21048104

Neighbor

gene id symbol gene type direction distance location
cep55 NA coding upstream 622 21031902 ~ 21043890 (+)
emc9 emc9,LOC106579550,LOC106590414 coding upstream 42501 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 47855 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 178727 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 233370 20800120 ~ 20811142 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 58938 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 268543 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 346824 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 541953 21625601 ~ 21629176 (+)
LOC111192390 NA coding downstream 740731 21824379 ~ 21828127 (+)
G38062 NA non-coding upstream 62749 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 169236 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 254386 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 498875 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 533326 20509679 ~ 20511186 (+)
G38093 NA non-coding downstream 47982 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 188484 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 233455 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 238191 21321839 ~ 21322611 (+)
G38117 NA non-coding downstream 275491 21359139 ~ 21359560 (+)
G38079 kif22,LOC107664627 other upstream 13715 21019169 ~ 21030797 (+)
G37943 NA other upstream 886173 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1533071 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1559597 19481056 ~ 19484915 (+)
G37749 NA other upstream 1712851 19329368 ~ 19331661 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 25432 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 82920 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2663821 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2663923 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2664025 23747673 ~ 23747745 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G203251 NA non-coding NC_048566.1 CM023220.2 91368559 ~ 91369003 (+)