LOC103037544 (adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059)


Basic Information

Item Value
gene id LOC103037544
gene name adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24652629 ~ 24663580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235900.2
TCTGCTGGTCGTGTTCACTTTTACAGCCTGCAGAAAGTTTACACCACAGTTTAAACTCTGGGCTGCAGATTagatttctgtatatttaataatCCGTTTTGAGCAGCAGAGACTGCAACATTTCCTTGAACTGAAGATTCGTTAGTCTGTAAAGTTCCTCCGGGTTTAGTGCTGGTTAGCAGCTTCAGTAATCCGGAGTCAAACCCGGTTTGGTCTATATTTAACTAACTAAACAGGACGGACTTTAGCGGAATAACCACAAACAGAGCAAAACTACCGAAGCGAGAGAGCACGCTTCACCCCGGGGTCCAGCGCAGCTACTTTTACATAAATACAGAAACATCTGAAGACTTAAATCAGGAGGAACCCGAGTCTGGGTCCAGGGCACTTTCCTGCTCCGCCTACCCGCCTGACAAATCGCTGAACTCGGCTACAAACCCAAGCATGGCCCGGCCTGCGACTCTCGAGCACTACAAGGCCGGCATGTTGCTGAGTGGTGTTGGAGATGCTCTCGGCTACAGGAACCAGCTGTGGGAATACAATGAGTCTGGCCCAGTCATACACCAGGAACTGAAGGAGCTTGGAGGGCTGAAGAACATCACAGCTAAGCTGCCCGACTGGCCGGTCAGTGACGACACCGTCCTTCACCTGGCCACTGCTGAGGCTTTAGCCACAGGAAAGGAAGGGGAGGAGCTTCTGCATGAAGTGGCTTCACGTTATGTGGAGGGAATGAAGGACATGGAGGGAAGAAAGCCCGGACCCTCCAGCATTCTGGGTGTATCTCAGTTAAAACCAGGAACTGAAGGGGGGTACAGAGTGCTGTATAACCCAGAAGGCACGGGATGCGGTGCTGCTATGAGGTCTATGTGTATCGGGTTGAGGTACCCACGGCCCGAGCAGCTCTCCTCACTGGTGGCCGTTGCTGTCGAGACGGGGAGAATGACCCatccacatccaacaggattctTAGGTGCAGTCGCGTCAGCATTATTCACGGCATACGCTGTACAGCGGCGTCCAATCATGACCTGGGGGCTGGGCCTGGTGAAGGAGGCGTGTCCAGTAGCGAGGGAGTTTGTGAAAACAGCAGGATATGCCGTGAGCGAGACTGAGAGAGACTGGGGATACTTCACAGAGAAATGGGAATGGTATCTTGATTTGAGGGGATTGTCTTCAGGATCTGGTCCAGTGCGATGGCCAGAGCAGTACGGCCCTGCTGAACGTGACGAGGCCTACAAGAGCTTCAGTCTGTCTGGGTGGGCAGGACGCAGTGGCCATGATGCACCAATGATAGCACTGGATGCCCTGCTTGGGGCGGGCTCAGACTGGGAGGAGCTAATGAGTCAGGCGGGATTCCATGGAGGAGACAGTGACAGCACTGCTGTGATCGCCTGCTGCTGTTGGGGGCTGCTGTACGGAACAGAGGGGGTTCCAGAGTGTAACTACAGCAGCCTGGAGTACAGGGACCGACTGGAGAACAGTGCGGAGAAACTTTACGCACTGTCACACTGAAGCACAGTAGAAACTCACTGTTCTGCACAGAAGATTGGTTCTATATGTTTTTTAGACTATAACACTATTTATAGAACACAAGACTATGTAGCCCTGTGTCTTATTAAAAAGCTAGTCTGTGATTGTACCTTTTTAATGTCTTAAATTCTACATTAAATGTAGAATTTGTGGAATCTGTAATTATTAAGACAGAAAACTATGACTATTTGTTTGTTCAGGTATTAATTAGAGCTGCTGAATGTATTGTTGTGTAGCAGCATGGCTCTTTACACAAACTGTGCCGTTGTGCAGGTGGTTAAAGTGGTTCTGTACCCTTAAAATAAACGGGTTCAGTATGCTGGTGGGGAAGCCCTGCCTCGATgaggagatctgtgcaagtgcaGTAACCAGAGTTTTTTTGGGTATTAAGGTGCCAAACTGTTCAAACGACTGAagtttttgtcagattttatcagtgatttaaaatatgttgtttaatGGACAGAAGGCTGGTGTTGTATGAGTGAATAGAACTGCTCGCCAGAGGAACTGACTTGCCTGTATATGTTAAAATGTGACCTACAGTTTAGGTTGCTGTAAATGAATGTTAACAAACATGATTAAACTAGAAATGTTCACAccttatttttgttaaattcattaataatattgtcaatTTCGTTCCCAACATTCTGCCATAATCTGCAATAATTCTGCCAATTTCttcaagcacgccacaaacagtttgtgcttgcagaaatggcttctttcgcatcactctcccatacagcttctc

Function

symbol description
adprh Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within protein de-ADP-ribosylation. Is expressed in several structures, including adaxial cell; lens; liver; musculature system; and notochord. Orthologous to human ADPRH (ADP-ribosylarginine hydrolase).

NR:

description
PREDICTED: protein ADP-ribosylarginine hydrolase-like

GO:

id name namespace
GO:0051725 protein de-ADP-ribosylation biological_process
GO:0003875 ADP-ribosylarginine hydrolase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01245 ADPRH; ADP-ribosylarginine hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235900.2 True 2287 mRNA 0.48 8 24652629 24663580

Neighbor

gene id symbol gene type direction distance location
LOC111192396 LOC108411010 coding upstream 4019 24631703 ~ 24648610 (+)
LOC111192424 NA coding upstream 249970 24401118 ~ 24402659 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 967071 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 1058587 23418853 ~ 23594042 (+)
tfam NA coding upstream 1256251 23387980 ~ 23396378 (+)
mto1 mto1 coding downstream 33556 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 67320 24730900 ~ 24744132 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding downstream 87471 24751051 ~ 24765736 (+)
LOC103035674 LOC108411004 coding downstream 110151 24773731 ~ 24786710 (+)
pelo pelo,LOC107653258 coding downstream 184556 24848136 ~ 24865954 (+)
G38833 NA non-coding upstream 137638 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 142405 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 177201 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 208223 24443634 ~ 24444406 (+)
G38832 NA non-coding upstream 225904 24426446 ~ 24426725 (+)
G38903 NA non-coding downstream 89175 24752755 ~ 24756580 (+)
G38907 NA non-coding downstream 105579 24769159 ~ 24813837 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding downstream 124165 24787745 ~ 24795792 (+)
G38909 NA non-coding downstream 142478 24806058 ~ 24807357 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 171972 24835552 ~ 24839365 (+)
G38870 NA other upstream 35177 24616784 ~ 24617452 (+)
G38817 NA other upstream 678109 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 902436 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 902538 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 902640 23749917 ~ 23749989 (+)
G39179 NA other downstream 711379 25374959 ~ 25375344 (+)

Expression


Co-expression Network