mto1 (mto1)


Basic Information

Item Value
gene id mto1
gene name mto1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24697136 ~ 24713813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235895.3
GGAGAGACTCTGCGGTAGACATGGCGGCGCGCAGTTAGCTCTCTAAAGAAGATATGGAAAAATATAACGTTAAATAACTGCTGTAACTGCTATAACAGCTATAAATGCTACAACCCTGAACACTTTCCAGAGCAGCGGACCGGCGGGAGCGGAGGAACTCGCCTGAATTTGCTGcaCACCATCTCTACTTTTGCATATGAGGACAAATAAATGACAGTTTGATGTTACCAGTACGAAGACTGCTCGCCCAGCCTCGTTTTCCGTCCTTTAGCCTTGCTCGGTCTTCCAGTAACAGCTCCCACAAAAGATATGACGTTATCGTGGTGGGCGGTGGACATGCCGGCACAGAGGCAGCCGCTGCTGCAACCAGGATCGGGGCCGAGACGCTGCTTATCACACAGAAAATCCAAACAATCGGGGCATTGTCATGCAACCCATCAATGGGAGGAATTGGGAAAGGGCATCTAGTAAAGGAGGTGGATGCTCTAGATGGCCTGATGGGACGGGCTGGCGACTATGCCGGGGTTCACTTCAGCATCCTCAACCGTCGGAAGGGGCCAGCTGTGTGGGGCCCTAGAGCGCAGCTTGACCGCAGCCGCTACAAAGAATTCATCCAGtCAGAGTTGTTGAACATGCCGAGATTGACTGTGATCGAGGGATCAGTGGAGGGTCTGCTTGTGTCCGCAGCTGATCCAGAACAGCCGGGAAAGCACAGAGTGACCGGAGTAAGAATGGCTGATGGTGGTGACAAAATTCTCTGCAGTTCTGTTGTTCTCACCACCGGCACGTTCCTCTCCGGCTCTCTCTTCATGGGACGTACCACTTCTCCCGGAGGCAGGATGGGTGAGGCTCCTTCCTGTGCTGGGCTATCCCACAGTCTGAAAGAGGTGCTGGGGTTAAAGCTGGGCCGCCTGAAGACCGGCACGCCCCCTAGGATCATCAGAGAGACGGTCAACTTCTCCCTCACACAGCTTCAGCTGCCTGACCCGCAGCCAACTCCATTCAGCTTCATCAATACGCACACACACTGCAAGCCTGAGGAGCAAATCCCATGTCATCTGACAGTGACCACGCCTGGGGTAGACCGAGTGGTCAGAGAAAGTCTACCCGTGAACTCACACGTACAGCAGGACACAAAAGGACCAAGGTACTGTCCCTCCATTGAGTCGAGGGTGCTGCGCTTTCCGGGCCGACAGCACCAGGTGTGGCTGGAGCCGGAGGGTTTGAACTCTGACCTTATTTACCCTCAAGGTTTATCCATGACCATGCCCCCAGAGTTGCAGCTCCGTCTCATCCGAGAGATCCCTGCTCTGTCTCAGGCAGAGATCCACACACCAGGTTATGGGGTGCAGTATGACTTTGTCTGCCCAACACAGCTCTTTCCCTGGCTGCAGCTGAAAAGCGTTCAGGGGCTCTTTCTTGCTGGGCAAATCAATGGGACCACAGGTTATGAGGAGGCAGCAGCACAGGGCCTGTGGGCGGGTGTGAACGCCGGCAGGACCGCCCTCTCTCTgccccctctatctctctcacgaACTGAGAGCTATATCGGTGTCCTAATTGATGACCTGGTGGTGCACGGGGTCACAGAGCCATACCGCATGTTCACCAGCCGAGCTGAATTCAGAACCTCCCTCAGACCAGACAACGCTGACCTTCGCCTGACCCCCAAAGGGCGTGAGGAGATTGGCTGTGTGTCCCAGCACCGGTACCAGGAGGCTGTTCGAGTGCAGCAGGGCCTGACTGAGGCTCTCTCCACCCTGAACTCCATCAGCCTGTCACCCCCTTGCTGGAGAGAGAAGCTGAGCGATGTCGGCATCAGTGAGAACAAAAGCACTCTAATCAGtggagaGGAGATGCTGCTGTATACAGACGTCTCCTTCAGCATGCTGGCCTCCACTTTCCCAGACCTCCTGTCACCGTATCTGGAATTTGCTGAGAGAATAAAAATTGAAGCTGTGTACCGACCTCACTGTGAGAAGCAGcagagggagatggagagaatgCGAGAGGAGGAGAGTCTTTCTTTGCCTCCGGATTTCGACTACTTCTCTCAGCAAGTGTCTCTCTCTAATGAGGTGCGAGAGATACTTGACCGAGCTCGGCCGAGCACGCTGGGAGCGGCCATGCGACTGAAAGGCGTCACTCCGGCAGCCACTGTCCATTTGCTGAACTACGTCACAAAAACAGACCGCAAGACCAGAGGGAAATGATGGTTTATGGGCAAAGACTCCTGATTGGACAGGTCGGCCTCAGTCTCGCCAACACATGGAACGGTTCAGTCCACATCAAGAGGATGGAGTTGTGCTTCAGAATTGAAGCATGAAGCAATGTTCTGAGACTGTTACTATAATAAAGGAAAGACTTCACACTGATATATTAtgtaaaattatgtattttgctaaataaattattacaaaaaatctG

Function

symbol description
mto1 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in mitochondrial tRNA wobble uridine modification and tRNA methylation. Predicted to act upstream of or within tRNA processing. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 10. Orthologous to human MTO1 (mitochondrial tRNA translation optimization 1).

NR:

description
protein MTO1 homolog, mitochondrial

GO:

id name namespace
GO:0002098 tRNA wobble uridine modification biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235895.3 True 2427 mRNA 0.53 14 24697136 24713813

Neighbor

gene id symbol gene type direction distance location
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 33556 24652629 ~ 24663580 (+)
LOC111192396 LOC108411010 coding upstream 48526 24631703 ~ 24648610 (+)
LOC111192424 NA coding upstream 294477 24401118 ~ 24402659 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 1011578 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 1103094 23418853 ~ 23594042 (+)
LOC103035992 NA coding downstream 17087 24730900 ~ 24744132 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding downstream 37238 24751051 ~ 24765736 (+)
LOC103035674 LOC108411004 coding downstream 59918 24773731 ~ 24786710 (+)
pelo pelo,LOC107653258 coding downstream 134323 24848136 ~ 24865954 (+)
pkmyt1 pkmyt1 coding downstream 281673 24995486 ~ 25008027 (+)
G38833 NA non-coding upstream 182145 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 186912 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 221708 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 252730 24443634 ~ 24444406 (+)
G38832 NA non-coding upstream 270411 24426446 ~ 24426725 (+)
G38903 NA non-coding downstream 38942 24752755 ~ 24756580 (+)
G38907 NA non-coding downstream 55346 24769159 ~ 24813837 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding downstream 73932 24787745 ~ 24795792 (+)
G38909 NA non-coding downstream 92245 24806058 ~ 24807357 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 121739 24835552 ~ 24839365 (+)
G38870 NA other upstream 79684 24616784 ~ 24617452 (+)
G38817 NA other upstream 722616 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 946943 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 947045 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 947147 23749917 ~ 23749989 (+)
G39179 NA other downstream 661146 25374959 ~ 25375344 (+)

Expression


Co-expression Network