LOC111192396 (LOC108411010)


Basic Information

Item Value
gene id LOC111192396
gene name LOC108411010
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24631703 ~ 24648610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669371.1
TCCTTAccacaatttaatgctttaaagtaCGAGTTTATATGGTTCTATTTCACAAACGAAGTGAAAATTCTCTTACCCGAAGGTACAGAAAGAAATAGAAGCGCAAACTGAAACACACAGCCCGTCTAAGCCCCTCCGCCGCGCTACGTCATGATTTCGACATGCGCAGTAAAGGGGGAACAGGGGGAACTGAATTCACCGTAACACCGGCTGCCGTAAAACcccacagaagaagaagaagaagctgctGGACACTGTTTGGGCTGTCATCATGGACAGTCCCGTTACTCTGGAGCACTATGAAGCTGGAATGCTGCTTAGTGGTGTTGGAGATGCGATTGCCTTCAAGTGGGAGTTTGAATATTCTGGGCCAACCATCCATCAGgctGTGAAGGAGCTTGGAGGCCTGAAAAACATCACAGCTAAGCTTCCGGAATGGCTGGTCAGCGACGACACCGTCCTCCACCTGGCCACTGCTGAGGCTTTAGCCACAGGGAAAGAAGGGGAGGAGCTTCTGTATGAAGTGGCTTGGCGTTACAAAAAGGGAATGGAGGACATGAGTGGGAGGGCGCCGGGTGGCTCTACTATTATGGGTGTACAATATTTAAGGCCAGGCCAAAAAGACGGCTACAGAATCCCCTATAACTCACGGAGTGGAGGATGCGGGGCTGCCATGAGGGCGATGTGCATTGGTCTGAGGTACCCTAAACCGGAGCAGCTGTCGACTCTGGTGGCCGTGGCTGTGGAGACGGGGAGAATGACCCACACTCATCCTACCGGGTTCTTAGGCAGCGTGGCTTCTGCACTGTTTGCAGCCTACGCTATCCAGCGACGTCCAATCATGACCTGGGGGCTGGGCCTGGTGAACGAGGCGTGTCCAGTTGCGAGGGAGTTTGTGAAAACAGCCGGATATGCCGtgaaagagactgagagagactgGGGATACTTCACAGAGAGATGGAAATGGTACCTTGAACTGAGGAATTTGTCATCAGGAACCGGACCAGTTCCCTGGCCTGAACAATACGGACCAGCTGAACGAGACGAGGTTTATAAAAGCTTCAGTTGGCGTGGATGGGGAGGAAGCAGCGGCCATGATGCACCAATGATAGCACTGGATTCCCTTCTGGGGGCTGGCTCAGACTGGGAGGAGCTAATGAACCGAGTAGCATTTCATGGAGGAGACAGTGACAGCACTGCTGTGATCGCCTGCTGCTGTTGGGGGCTGCTGTACGGAACAGAGGGAGTTCCAGAGTGTAACTACAAGTGGCTGGAGTACAGGGGCAGACTGGAGAAAAGTGCAGAGAAACTTTACACACTGTCGCACTGAAACTGGATAAGCAACATATATTACCACTACAAAAAACCAAGCAACGATTAGTGCCTGAAACTGATTTTATATCACAAATAATTAATCGTAAAGTGCTATTTAAAAACCCTTTGTTCTTGTACagtgacttgcaaaagtatttttaccccttgaactttttcacattttgtcaccttacaaccacaaacttaaattatttaaatgagattttaagtgattgaccaACAGAAAATAGCACACAATTGTGAAGTAGaatgaaaattataaaaaaaaatgtaatcaaataaaaa

Function

NR:

description
PREDICTED: protein ADP-ribosylarginine hydrolase-like isoform X1

GO:

id name namespace
GO:0051725 protein de-ADP-ribosylation biological_process
GO:0003875 ADP-ribosylarginine hydrolase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01245 ADPRH; ADP-ribosylarginine hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669371.1 True 1620 mRNA 0.48 8 24631703 24648610

Neighbor

gene id symbol gene type direction distance location
LOC111192424 NA coding upstream 229044 24401118 ~ 24402659 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 946145 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 1037661 23418853 ~ 23594042 (+)
tfam NA coding upstream 1235325 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 1631080 22998679 ~ 23000623 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 4019 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 48526 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 82290 24730900 ~ 24744132 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding downstream 102441 24751051 ~ 24765736 (+)
LOC103035674 LOC108411004 coding downstream 125121 24773731 ~ 24786710 (+)
G38833 NA non-coding upstream 116712 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 121479 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 156275 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 187297 24443634 ~ 24444406 (+)
G38832 NA non-coding upstream 204978 24426446 ~ 24426725 (+)
G38903 NA non-coding downstream 104145 24752755 ~ 24756580 (+)
G38907 NA non-coding downstream 120549 24769159 ~ 24813837 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding downstream 139135 24787745 ~ 24795792 (+)
G38909 NA non-coding downstream 157448 24806058 ~ 24807357 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 186942 24835552 ~ 24839365 (+)
G38870 NA other upstream 14251 24616784 ~ 24617452 (+)
G38817 NA other upstream 657183 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 881510 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 881612 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 881714 23749917 ~ 23749989 (+)
G39179 NA other downstream 726349 25374959 ~ 25375344 (+)

Expression


Co-expression Network