G38909


Basic Information

Item Value
gene id G38909
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24806058 ~ 24807357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52430
AacatagagagaaacagaaCATTGAAGCCAAACTTGGCCTGGTTCTTCTTGACCTGGTCAGGGCTAAGACCAGTGGTCTCGCTGACCCCGAAGAAAGCCAAAACTTCCTCGGGGTTCTTGGTGTGGGCGTCCTGCATCCTGTTACGGCTGAAGGATCTTCAGGAGTGAAACTGGCTTAAGCCAAACGTGTCTATCCGTGTTTTTTGTTTCGTATTTGTGTCGCTCTTGTTGGTCTCTGTACCAAGAAGACTGTCCCCGTTACTTTGACCCCCTCCTTACAGGAGTGCCGGACTGACAGAAAGAGCGAACGAACTCA

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko00500 Starch and sucrose metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU52430 True 316 lncRNA 0.50 2 24806058 24807357

Neighbor

gene id symbol gene type direction distance location
LOC103035674 LOC108411004 coding upstream 19348 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 40322 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 61926 24730900 ~ 24744132 (+)
mto1 mto1 coding upstream 92245 24697136 ~ 24713813 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 142478 24652629 ~ 24663580 (+)
pelo pelo,LOC107653258 coding downstream 40779 24848136 ~ 24865954 (+)
pkmyt1 pkmyt1 coding downstream 188129 24995486 ~ 25008027 (+)
LOC103031867 NA coding downstream 208979 25016336 ~ 25020657 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 214834 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 486896 25294253 ~ 25333929 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding upstream 10266 24787745 ~ 24795792 (+)
G38903 NA non-coding upstream 49478 24752755 ~ 24756580 (+)
G38833 NA non-coding upstream 291067 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 295834 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 330630 24466389 ~ 24475428 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 28195 24835552 ~ 24839365 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding downstream 138623 24945980 ~ 24992978 (+)
G38946 NA non-coding downstream 141428 24948785 ~ 24952976 (+)
G38947 tgfb1i1 non-coding downstream 151876 24959233 ~ 24962185 (+)
G39119 NA non-coding downstream 401140 25208497 ~ 25208996 (+)
G38870 NA other upstream 188606 24616784 ~ 24617452 (+)
G38817 NA other upstream 831538 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1055865 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1055967 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1056069 23749917 ~ 23749989 (+)
G39179 NA other downstream 567602 25374959 ~ 25375344 (+)

Expression


Co-expression Network