pelo (pelo,LOC107653258)


Basic Information

Item Value
gene id pelo
gene name pelo,LOC107653258
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24848136 ~ 24865954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669381.1
TGACGCTGCACGCGCGCCCCACGCTGCTGAGtcggtgtgagtgagtgtggagAGAATGGCAGCAGATAAACTCCCAGCAGCAGATCTCCCAACACACAGCGAGTTTCTGGATTAACCCTCTCCCACACCCTTCAGCGCTACTCCACAACTACAGGACCGTCTGAGCCACCATGAAGCTCCTCCACAAAGACATAGAGAAGGATAATGCGggTCAGGTGACACTGATTCCAGAAGAGGCAGAGGATATGTGGCACACTTACAACCTGCTTCAGGTCGGCGACAGTCTGAGAGCCTCCACCATCAGGAAGGTGCAGACAGAATCATCCACAGGCAGCGTGGGAAGCTCACGGGTCCGAACAACGCTGACCGTCTGCGTAGAAACCATCGACTTTGACTCGCAGGCCTGTCAGCTTAGGGTGAAGGGCACCAACATCCAGGAGAACCAGTATGTTAAGATGGGCGCCTATCACACTATTGAACTGGAACTCAACAGGAAGTTCACTCTTGCCAAAAAAGTCTGGGACAGTGTGGTGTTGGACAGAATTGAGCAGGCGTGTGACCCCGCCCAGAAAGCAGATGTGGCTGCAGTAGTGATGCAGGAGGGCCTGGCCAACCTGGTGCTGGTGACTCCTGCCATGACCCTGCTGAGGGCCAAGGTGGAGGTCACCATTCCCCGCAAAAGAAGAGGCAGCTGTGCTCAACACGAGAAGGCACTGGAGAGGTTCTACGAGGCTGTGATGCAGGGGATTCTCAGACACTTCAACTTTGATGTGGTGAAGTGTATCCTGGTGGGCAGTCCAGGCTTCGTTAAGGACCAGTTCATAGCTTACCTCTTTAAAGAGGCTGTGAGGCAGGACTGCAAAGTGCTGCTGGAGAACAGACCCAAGTTCATGCTAGTGCACTCCTCCTCTGGACACAAGTACTCTCTAAAAGAGATATTGTCTGATCCAGCAGTTACCAGTCGTCTCTCCGACACAAAGGCTGCAGGGGAGGTCAAAGCATTAGAGGATTTTTACAAGATGTTGCAACACGAACCTGATCGAGCTTTCTACGGAGTGGCACATGTGGAAAAGGCTGCTGAAGCTTTAGCCATCGACATTTTGCTGATCAGTGACAAACTGTTCAGACATCAAGATATAGCCACCCGGAGCCGATATGTCCGGCTTGTGGACAATGTGAGAGACAACGGAGGAACAGTCAGGATATTCTCAAGCTTGCATGTGTTTGGGGAACAACTCAGTCAGCTTAGCGGCGTGGCAGCAATCTTGCGATTCCCCATTGCAGACCTCTCTGAGGCCGAGGAGGACGACAGCAGTTCAGACGAAGAGTGATCTTTATGCTTCTGTTGTTGGCTGGCAGcgaacattcagaaaacattttGCGCTGGAAACATCATAAAGCGTTTAAACCACTCTATCACCATCACAACATGAGTAACGTGCCTTTTACACccataacagtaataatattggTTAATGGCAAAATCAGCTAGGACCCCAGAATCCCACATTTTTCTGATGTCAGCTCTTACTCACTGATAACAAACCAGGTTTTATTATCAAAATCTCTTCCTGTATTAAAAATGTAGTCAAATGCGGAATTTCTTCTCTTATATTTGGTCATACCATAAGAACAGTCTCTGTCTGGTCTGGTAAGGGTTAAACCAAACTCTGAGACACCAGAGAGTTCCTTTCTATTTAATTCCACTTCTGCTTGGGCATGAAGCACAAACGTAATAGTAAAGTAGACTGAGAAACACTAAAGACTGGTGTAGCCCTTATGTAAGACTTGGAGATATACCTGCTGTTTGGCCATGCGTTTGTGTACAAGACTTGCCTGTGCGTTATGCATGTTACTGGAGGCTTCCACTAGAGGGGCAGCTTGGGCGTCTGATGGCTGCTGGACTAAACTCCATCGTCTCCATGCTCACtcagtttctccagcattttCTGCCCATATTTATGGTCAGGGTCATTTCTTAAGGATGAGCACAACCGAAGCTCCAAACAGACCCAGGAGACAAGAAGCTGCCATAATGCGTACATGTACACATAGTTAACAGCTAGTAAATCTCTACCCTAAATTAGATTTGTAATAATCTGGGTTCTACAGATCAGAGTCCAGCAGAGTTTTGGGTATCACATTATTTGGCTGGTCCATAATATCTATTTACCTTAATGCAgcataactaataactaataagttaaatgtaaatgattgtCTATAGAACTTTATCCTACatctaacctcaaccatgaaccaaccttaaaacctaaccctaacccagtCCTTAACCTAAATCTTAAGGGACACATTcctagacagggattaagtctagtTGTGGACTATATTTTCtgtcaatggaaaatctccattcagaatggtgtgtagtccaagactataTTTAATCCTTATCTGGGAAACTAAAACTGACcctaaaaatgttataattatcTTGAAATTGGGTGTAGACTTACATGCAATGAGATCCATATACTTTCACCTGAAAGTTCAGTTGACATTTTATTGAATGTTAGAGCTTTCCTGAAGCATCtacaatggaccatccaagtaaagtgtgaacaagttttgttatttcagcgcTGTAACAAGGAATGCATTCAGTTATTGcactcattgctgacacagatacaaataaacacaccttgtctagtccctgtggAGTGGCACTgccaataaacaacaaaaatggaATTATGGTGCTTCATACAGTAGGCTTGTGCAAAGTTGGATAGttagggatgaggtggggttctgctcatccaacatcctgacctcactaatagGCTAGTcaataaatgtactttattcCTTACAGCAGTACACCTAAATCCAATACAGTGTCTTCTCTGGACTGTAGAAACAGATATTACaccaaaagcaggataaacttgaaatttaatacccttgatttcagcaAAAACAATGCATAAGagggtgtcccaatacttttgtccatttagtgtattttttgagCCTGCTAATGAACAGAGAATTTGATTATGGTGTGTTGGAGTGGGAAACACAACAAACATTGCTGGACACCAGCCCTCCAGGACTGAAGAAcataattaatcacatttgATTTGTGAATGGTGGGATGAGGTGGTCTGTAATGAAGTGTATTGCAGTAcacaacatgtaaaaaaaaaaaaaaatcagtttaataTTGCCTGAAAATTTTCAAATTAATCAGCGGGCTGCCATTCATCTGGACAGTTTTTGGGGTgccaaatgaaaatgaaatgggaAGATGTTTATCTACATTCAACAAATTAAGTTCATTAGAAAATGTAGCTTTCTTTCTTTACATTCTGAGTGTACATAATATTGTTACTTTCAATAAAGCAGCTGCAGAGTTTCAGAACATGCTGTTCA

Function

symbol description
pelo Predicted to enable endonuclease activity and metal ion binding activity. Predicted to be involved in nonfunctional rRNA decay; nuclear-transcribed mRNA catabolic process, no-go decay; and ribosome disassembly. Predicted to act upstream of or within RNA surveillance; cell division; and nuclear-transcribed mRNA catabolic process, non-stop decay. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human PELO (pelota mRNA surveillance and ribosome rescue factor).

NR:

description
protein pelota homolog

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06965 PELO, DOM34, pelA; protein pelota

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669381.1 True 3399 mRNA 0.44 13 24848136 24865954

Neighbor

gene id symbol gene type direction distance location
LOC103035674 LOC108411004 coding upstream 61426 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 82400 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 104004 24730900 ~ 24744132 (+)
mto1 mto1 coding upstream 134323 24697136 ~ 24713813 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 184556 24652629 ~ 24663580 (+)
pkmyt1 pkmyt1 coding downstream 129532 24995486 ~ 25008027 (+)
LOC103031867 NA coding downstream 150382 25016336 ~ 25020657 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 156237 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 428299 25294253 ~ 25333929 (+)
LOC103022410 NA coding downstream 493505 25359459 ~ 25364883 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding upstream 8771 24835552 ~ 24839365 (+)
G38907 NA non-coding upstream 34299 24769159 ~ 24813837 (+)
G38909 NA non-coding upstream 40779 24806058 ~ 24807357 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding upstream 52344 24787745 ~ 24795792 (+)
G38903 NA non-coding upstream 91556 24752755 ~ 24756580 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding downstream 80026 24945980 ~ 24992978 (+)
G38946 NA non-coding downstream 82831 24948785 ~ 24952976 (+)
G38947 tgfb1i1 non-coding downstream 93279 24959233 ~ 24962185 (+)
G39119 NA non-coding downstream 342543 25208497 ~ 25208996 (+)
G39123 NA non-coding downstream 352093 25218047 ~ 25218306 (+)
G38870 NA other upstream 230684 24616784 ~ 24617452 (+)
G38817 NA other upstream 873616 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1097943 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1098045 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1098147 23749917 ~ 23749989 (+)
G39179 NA other downstream 509005 25374959 ~ 25375344 (+)

Expression


Co-expression Network