G38907


Basic Information

Item Value
gene id G38907
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24769159 ~ 24813837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52426
attatgtattggcatgtcaactgtgttgtatatttacattttctccactcttaaaaaaaaaaaaaaaaattgctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52426 True 259 lncRNA 0.08 2 24769159 24813837

Neighbor

gene id symbol gene type direction distance location
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 3423 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 25027 24730900 ~ 24744132 (+)
mto1 mto1 coding upstream 55346 24697136 ~ 24713813 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 105579 24652629 ~ 24663580 (+)
LOC111192396 LOC108411010 coding upstream 120549 24631703 ~ 24648610 (+)
pelo pelo,LOC107653258 coding downstream 34299 24848136 ~ 24865954 (+)
pkmyt1 pkmyt1 coding downstream 181649 24995486 ~ 25008027 (+)
LOC103031867 NA coding downstream 202499 25016336 ~ 25020657 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 208354 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 480416 25294253 ~ 25333929 (+)
G38903 NA non-coding upstream 12579 24752755 ~ 24756580 (+)
G38833 NA non-coding upstream 254168 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 258935 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 293731 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 324753 24443634 ~ 24444406 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 21715 24835552 ~ 24839365 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding downstream 132143 24945980 ~ 24992978 (+)
G38946 NA non-coding downstream 134948 24948785 ~ 24952976 (+)
G38947 tgfb1i1 non-coding downstream 145396 24959233 ~ 24962185 (+)
G39119 NA non-coding downstream 394660 25208497 ~ 25208996 (+)
G38870 NA other upstream 151707 24616784 ~ 24617452 (+)
G38817 NA other upstream 794639 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1018966 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1019068 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1019170 23749917 ~ 23749989 (+)
G39179 NA other downstream 561122 25374959 ~ 25375344 (+)

Expression


Co-expression Network