LOC103032189 (rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295)


Basic Information

Item Value
gene id LOC103032189
gene name rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 25022191 ~ 25025894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235880.3
GCTCCCGTGCGCATCATTTTTGGACCGTACCATCTCACTGGCGGCAGGGGGGTCTTATTTTACCGAgagttatatattttaaacattaatccGATATATATTCATGGACTCGCTTCATATGGACATAGATAATGTACATTATAAGCTAATTTACACCCTTAATTTGtcctgtttgtgtgtattgatGCAATGCTATGCGGCTGTGCTGTGTGTCTCCAGTGCGCATGTCCTTATATTGGTAGACTCCTCCCGTCTCGGTCTTTTCTCTCTAAGACCCGCAGCCATGAGcaTGCTCAGGCTTCAGAAGCGCTTGGCGTCCAGCGTCTTGCGCTGTGGCAAAAAGAAGGTCTGGCTGGACCCCAATGAAACCAATGAAATTGCCAATGCCAACTCCCGCCAGCAGATCCGCAAACTGGTGAAGGATGGTCTGATCATCAAAAAGCCCGTCACGGTGCACTCCCGTGCCCGCTGCCGCAAAAACATGTTGGCGCGCCGCAAGGGTCGCCACATGGGCACTGGTAAGAGGAAGGGTACAGCAAACTCCCGTATGCCTGTAAAGCTTTGCTGGATGCGCAGAATGCGTATTCTGCGTCGCCTGCTCCGCCGCTACAGGGAGGCCAAGAAGATCGACAGGCACATGTACCACAGCCTGTACCTCAGGGCCAAGGGTAACATGTTCAAGAACAAGCGCATCCTGATTGAGCACATCCACAAGCTGAAGGCAGACAGGGCTCGCAAGAAGCTGCTTTCTGACCAGGCTGAAGCTCGCCGTAGCAAGACCCGCGAGGCCCGCAAGCGTCGCGAAGAGCGTCTGCAGGCCAAGAAGGAAGAAATCAGCAAAACTCTGTCAAAGGAGGACGAGACCAAGAAATAAGCCTTTCATCTGCCCCCTTTCAGTTATAATAAAATGGACAAAAGGCAA

Function

symbol description
rpl19 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

NR:

description
60S ribosomal protein L19

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235880.3 True 922 mRNA 0.51 6 25022191 25025894

Neighbor

gene id symbol gene type direction distance location
LOC103031867 NA coding upstream 1534 25016336 ~ 25020657 (+)
pkmyt1 pkmyt1 coding upstream 14164 24995486 ~ 25008027 (+)
pelo pelo,LOC107653258 coding upstream 156237 24848136 ~ 24865954 (+)
LOC103035674 LOC108411004 coding upstream 235481 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 256455 24751051 ~ 24765736 (+)
LOC103022724 NA coding downstream 268359 25294253 ~ 25333929 (+)
LOC103022410 NA coding downstream 333565 25359459 ~ 25364883 (+)
LOC111192426 NA coding downstream 395431 25421325 ~ 25433217 (+)
LOC103024180 tlk2,LOC108431425 coding downstream 410561 25436455 ~ 25461136 (+)
brca1 NA coding downstream 452642 25478536 ~ 25534478 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding upstream 29213 24945980 ~ 24992978 (+)
G38947 tgfb1i1 non-coding upstream 60006 24959233 ~ 24962185 (+)
G38946 NA non-coding upstream 69215 24948785 ~ 24952976 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding upstream 182826 24835552 ~ 24839365 (+)
G38907 NA non-coding upstream 208354 24769159 ~ 24813837 (+)
G39119 NA non-coding downstream 182603 25208497 ~ 25208996 (+)
G39123 NA non-coding downstream 192153 25218047 ~ 25218306 (+)
G39177 NA non-coding downstream 342885 25368779 ~ 25369315 (+)
G39185 NA non-coding downstream 387757 25413651 ~ 25413994 (+)
G39191 NA non-coding downstream 436872 25462766 ~ 25465369 (+)
G38870 NA other upstream 404739 24616784 ~ 24617452 (+)
G38817 NA other upstream 1047671 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1271998 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1272100 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1272202 23749917 ~ 23749989 (+)
G39179 NA other downstream 349065 25374959 ~ 25375344 (+)

Expression


Co-expression Network