G38945 (patl2,tceb2,elob,LOC100708306,LOC102795145)


Basic Information

Item Value
gene id G38945
gene name patl2,tceb2,elob,LOC100708306,LOC102795145
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24945980 ~ 24992978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52483
TTAAACGCTTTAATCACAAttaaagagaaaggaaaaaacaaatgaaaaaaacaaacaaacaaacaaaaaaaaagataaattagATAATGCACTATTGATCAGTTTAGGGGCTAGGCTGAAAAACATGAAGTGGGCAGACCTGAAGTGAAACACTTCACAAATGAAGACTCAAACACACTTTAACAGTGAGTTAAAACATCAAACTTTCGCATGTACTGGTGTTTatctacaactctgatattgctCTGGCCCaggtatttataaaaaaaaaaaagaaaagaaacaaaattataagacctctttttcctcttctcttttgatttaaattaaaactaacaACACAAATGGCAAGAGACGCCTTTTAGATGCGCAGCTACACTCAAACGAAGCCCAGTGTTCGGcttaaatgaacaaacaaaaacaaaaaacgagGTCAGTCAATGGAGCCAGTGCACTGGAAGCCAGTGAGATTGAAATGAACATCAGTCTAGAAAGAATGAGTAAACTATACTGcctgtaataataattataataataataataataatatcaacaTTAAATTGGGTTTGTTTTGCGAAGGTCTGTGTGGACACACTGAGGAGTGATAGATTCAGTTCAGTTCGACTGCAGGTGACAATATGCCCCATTTGGTTTGTTAAACGCCTAAACCCCTTTAAGTACTCAGTCCGGGTGTGTTGGACTCTTCCTCGTAACAGAGCGTTcggttcttcttctcctctttttatCCTCTCCttctcatcctcctcttctgtTTCTTCTTACTGCACCGACTGTTCGTTAGCCGTGCTGCCAGAGTCCTGAGGCTTCATTACGTCAGGGAGCTCTGGAGGGTTGGAAAATGCCTCCACCTGCAAAGGCTCAAACGTATCatCATTGATGCGGAAGGCTAATCCTACAGTAGCTGGAGACTGTGGTCTGGCTGTTTGGTTGGTAAAGCCGGAGTCTCCCAGTGTTTTACTGTCTTCTAGCAGCTGCTCATcCTTGTAAAGCCTCTGGTCTTCAGGCGGCCTCTTTAGGATTCCCTGGACAATGCGCTTCAGCTCGTAAACCGTGGTGGATTCCTTAGCATCAGTGAAAATCGTCGTCTTGTGACGCCtaatcattaaaaacacatcCATAGCTGAAGTTTATGCTGCTCCGCTTCTCCACCCACAGAGCTGCGCCAACAGCGTAACTAACAGCGTAACTAACGCACAGAGAGCGCAGTAATGAGGCGGCGGCCAGAGACCCTATACAAAGGAGAACACCCACTTCAGAATGTGTTCCGGG
>TU52485
ATATGGGTATACCTCATCTGTGTCTCTGCTCATCAGTGCTGGCAGGTGTGTCGTGATGACTGTCAGGATGTGCCGGGCTGCCTCCTGTGTCAGGAAGGGCAGCAGTCTGGCCAGCAGCCTCTTCCCTTTCGAGAGCAGGAGACACTGCAGAAACTCCTCTGTGGATTCTAGTGCGCTGGAGCTGTGTAGCTGGCTGTTTATTTCCTCCAGTCCTCTCTGCATGGTCTTCATCAgcctcttcttctcttcctcaTCAGACACTGTTGCTTTCGTCCTCTCCGCTTCCTCCACCCCCAACAGAATGACGTAACACTTCTCAATaatgttcagcacctccagccTCTGCTGCCTGGTATCTTTTTGCTCCTCAGGGGCGTGCACGTGGACAGCGTCTATGGCTCGGCGTGGGGAGTAACACGTAGACACCGCAACCTGACCCAGTGAACCCTCAATGTGGACCACTGGAGTGTAGGATACGGTTTTGGTGACGTACGGCGTGGTGAGTTTAGGCGGTTCCCTCTTTGAGCGGTCACCCAGCATTTCCTCTTCAGCCAGTTTAACCTCCATTCGCCGATAATACTCCTG

Function

symbol description
elob Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).
patl2 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to human PATL2 (PAT1 homolog 2).
tceb2 elongin-B

NR:

description
elongin-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52483 True 1290 lncRNA 0.42 4 24986834 24992978
TU52485 False 585 lncRNA 0.54 5 24945980 24947418

Neighbor

gene id symbol gene type direction distance location
pelo pelo,LOC107653258 coding upstream 80026 24848136 ~ 24865954 (+)
LOC103035674 LOC108411004 coding upstream 159270 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 180244 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 201848 24730900 ~ 24744132 (+)
mto1 mto1 coding upstream 232167 24697136 ~ 24713813 (+)
pkmyt1 pkmyt1 coding downstream 2508 24995486 ~ 25008027 (+)
LOC103031867 NA coding downstream 23358 25016336 ~ 25020657 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 29213 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 301275 25294253 ~ 25333929 (+)
LOC103022410 NA coding downstream 366481 25359459 ~ 25364883 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding upstream 106615 24835552 ~ 24839365 (+)
G38907 NA non-coding upstream 132143 24769159 ~ 24813837 (+)
G38909 NA non-coding upstream 138623 24806058 ~ 24807357 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding upstream 150188 24787745 ~ 24795792 (+)
G38903 NA non-coding upstream 189400 24752755 ~ 24756580 (+)
G39119 NA non-coding downstream 215519 25208497 ~ 25208996 (+)
G39123 NA non-coding downstream 225069 25218047 ~ 25218306 (+)
G39177 NA non-coding downstream 375801 25368779 ~ 25369315 (+)
G39185 NA non-coding downstream 420673 25413651 ~ 25413994 (+)
G39191 NA non-coding downstream 469788 25462766 ~ 25465369 (+)
G38870 NA other upstream 328528 24616784 ~ 24617452 (+)
G38817 NA other upstream 971460 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1195787 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1195889 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1195991 23749917 ~ 23749989 (+)
G39179 NA other downstream 381981 25374959 ~ 25375344 (+)

Expression


Co-expression Network