RNA id: XM_007231471.2


Basic Information

Item Value
RNA id XM_007231471.2
length 702
RNA type mRNA
GC content 0.59
exon number 1
gene id LOC103044640
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21352191 ~ 21352892 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCCAGCTCACCTCGGCCCATCCAGGACATTGTTCACcaggaagaagaaaagaagacgCTGAAGAGGAGCAGGAAGAGATCCTCCATCCAGCTGTCTCCTGCACCTCCTGCAGTGAAGAAGCAGAAGATCCAGGAGTCTGCATCTACACGTGACCTGAGGGATGGATCATCATCGTCCTCCTCCACGGCGGTACCTGCGGGTGCTGTGCTTTGCCAGGCCACGTCTGCTCTCACTCACGAGACGGTGCTGAAGGACGTCTGGTGTGCTGAGCTGCTGGACTTGCTAGGCGAGTTCCTGTGCCGCCGCTGCAGACGCCTGGAAGACTTCACTCCTGAGGTCTCCACGAAGTGGCTGCGCAGCGTGGACATGGTCCTGGTCATGGCCAGAGGACACTTCCTCTGCCCGGGCAGCGTGGTCTTCCTCTACATGGTGTGCCGGGACTCCATCTCAGCAGAGGTGTCCAGCGAGCACGAGATGTGTGTTGAGCTGCTCACCTGCTTTTTCGTTGCGTGCTCCTACATCGGCACTCAGCTCGGCTACCCCGCACGGCCTTTCATGCTGGAGAGGAACAGGCAGGACTTCTGGGAGCGCACTCTGGACATCACCAAGCGCATGAGCCAGAAGATGCTGCTGATCAACACCTCTCCGCAGTTCTTCTCCCAGGTCCTCGCTGACCTGAAGAACAGGACAGACGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51387 lncRNA upstream 29580 21321839 ~ 21322611 (+) True G38099
TU51397 lncRNA upstream 34846 21317103 ~ 21317345 (+) True G38106
TU51389 lncRNA upstream 79619 21272132 ~ 21272572 (+) True G38101
TU51380 lncRNA upstream 212290 21131630 ~ 21139901 (+) True G38093
TU51377 lncRNA upstream 223450 21118229 ~ 21128741 (+) False lgi1
TU51413 lncRNA downstream 6247 21359139 ~ 21359560 (+) True G38117
TU51418 lncRNA downstream 11469 21364361 ~ 21369269 (+) True G38120
TU51451 lncRNA downstream 221970 21574862 ~ 21620560 (+) True G38152
TU51455 lncRNA downstream 230566 21583458 ~ 21608327 (+) True G38155
TU51471 lncRNA downstream 333991 21686883 ~ 21693765 (+) True G38169
XM_022669336.1 mRNA upstream 55368 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA upstream 55368 21166568 ~ 21296823 (+) False plce1
XM_022669338.1 mRNA upstream 55368 21239080 ~ 21296823 (+) False plce1
XM_022669335.1 mRNA upstream 207997 21142586 ~ 21144194 (+) True slc35g1
XM_022669334.1 mRNA upstream 223427 21109080 ~ 21128764 (+) True lgi1
XM_022669341.1 mRNA downstream 77580 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA downstream 100331 21453223 ~ 21474118 (+) False ace
XM_007241520.3 mRNA downstream 272709 21625601 ~ 21629176 (+) True dlx3
XM_022669348.1 mRNA downstream 471487 21824379 ~ 21828127 (+) True LOC111192390
XM_022669347.1 mRNA downstream 491073 21843965 ~ 21850981 (+) True ptges3l
XR_002649894.1 other upstream 56901 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 321394 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1193852 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1867276 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2020530 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 2394577 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2394679 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2394781 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2394883 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 2394985 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile