G52494


Basic Information

Item Value
gene id G52494
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3150263 ~ 3156146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59800
CATAACCAGCATAATCCCATTCTTCCTCTTCAACTGAGATGAAATAAGTCCTGGTATCCTTGTCTCCAGCCATTTTTAAGAAATGCTGGGATGTTGTATCAAGCACTGGGCTTTGAACATCTGCCGATTTGCTATAAGGGTCTTTGTACTCCACATATTCATATTCTTCTGGGACATCTAACATACTATCAAAATCTGTTTCCTGCCCTTGTTTGGGAACATATAACTCATAATCATCGAAGTCCCGTCTTGGCACTCCTATGACGATGGCCTTCCCCATCAAGTCTTGCTCACTCGAGACAGGCTTGGTTCCCCTTGGGTTCAACACAGAAGGTCCAAAACCTCTTGGAGAAAAAGCAGAACGTGGCTGTGGCTTATACTCTTTCCTTTTCTTTGTCTTCATGCTATGTCCCTTTCTTGGCTTTACCCTCTGGTGAACTACTTTTTTTTTCTTTTCCTTCTTTTCACTCTTTGGCTTATTTGAATTTGCTGCGGATTTGTCTATAATGTATTTGTTCATGTGATCTGGGATCTCCATGTGAACCAATTCGTGTTTGCCCTCATATCCCCAATGCTCTTCTTTTAGGTCGATATGAGATGTGAGTATGGCCTCGCTGTGATTGTTCTTCAGATAGATGACCACTTCCTCTTCACTTTTGCTTTCTGAGCCATTCTTCATCAATGAAACATTGAAAGGGCCAAGAGACAAATTGAGACTTAAAATGCTCTCAGTTTCAGAATTTATCTGTGAAAGCATCTCACTGGTGTAATTCCCCTTTGTGCTGTTGAGTTCCTCAATCCCTGTTGTGTTTTCAGTTAGTTCATCAATGTCCTGTACTGTGTCCAATAGTGAGACATCATATTCCACCAAAGTCGTAAAATCTGTTGGAATTTCCAAGGGATGACCACTGTCCAGAAGCACAAAATCCTCCTCAACTTGTGTCTCTGAGATATTTGACAGAGAGTCAGGACTAGGCACGTTGTATATGAAGACGTGATCCGAACTATCACGGTCACCATCCACTATGTCAGTGCAATTTTTAACGTCATCTTTAATAACTGTTTTGTTTACTAAGGTTTGGTTTGATTGCAGGGGCTTTGATTCAGATGAATTTAAAGATGCTTTGTTATCCTCCATGGTGATATTTCTTTCACCATCTGGAGCATCAGATGAAGTGATACTTGTATTCGTGGGGAAACTTTGTGTTTCATTCATTGTGTGGGTGATGTTTGTTTCAATTATTGGAGCATGAGTAGTATTAGCAGAGACATGTTCTGTCTCTATTGATGAACTGTTGTCTTCTGCTATGTTGCCATTTATTTGAATATCCAGAGTGACGTTTGTGGAGACACTTTCAATTTTATTCACTGGCTTTGTTGGTAGACCACGAACCTTTCTCTCTACAACTGGAAAATGTGAGATAATATCCGTTTCGTTGTTTGACATGTCCTCGGAATTGGAATCAAAAATGCTCACTATGTCTAGCAAATCCTCTTCTGTGCTCTCATTCAAGACTTTATATGAAGACTGTATCTTGTCCAAACCAGCCACCTCAGCTGATAAACCATGAGTTTTAGTCTGACTGAAAGTTCCTAAAGTAACATTGTGTGATTTGTCAAACTTGTTGCTTGGGGCTGGACTTTTTGCCTCAACAGTCGGCAATAAACCATCATCATGATCTAGCACCGAAAGGTCAATTTGCTCAACTTCGTCTGTTAAGTTGACCAAACTTTTTGCCTCAACAGTCGGCGATAAACCATCATCATGATCTAGCACCGAAAGGTCGATTTGCTCAACTTCATCTACTACGTTTTTGAACGTCCTCAAGCCTAAGATGTCTGCATAGTTATCGGTATCCTCATCAACAACGCTAGGGTTTACTAATTTTGGTGGCTCTTTTTTGATTTCTGTGATGGACACAGGTTTCCATACAGTGTACTCTGACTCATAATTATATTCCATTACATAATCTCTGAAGCATTCAAGGTCCTTGAATTTCATCCTCATCCCTTTAGTGGAGTCATGAGAGTTCAGTGATGCTAAAAGCCAAATACCTATATTAACCATGTTCATAGAGATAGTTTCACCAGTCATGGGAAACAGACTGAGCATATCCTCTTCTCTGTTTTTTAGCTCAAATGTATGGCCATAAAAAGTGGCAGTCTGGATATAATCTTGTTCGCCAACATTCGACACGTGCCAGGTCACAATCTCACCATCACAAAATCCCAATTCTTGGCCACTTTCATAAACATAACCATTAATTGTGTGCATAACATTTGACTTGTAAAACTCAGGATCATCTCTTTTAACTCTTTTGGGGTCACTGCAGTATGTGTTAATGTTCTCATCATGGTACCAGCTCTTGTTCTCATCAAAAACTGTAAACATGGCATGCTGTTCTTTGTCAGCTTTTAGCTGGACATTCTTTTTATTGAGAGACTGGCTCTTACAGATGAGAAGAGGACCCACAAGACCAGAAGCAATGTCTCGAGGAATGTCCACTGCACTGTGGTACATCCTGGTCAGACATCTGGGGTCACTGTCCATTGGTACATCTTTCTCAGACACACTCCATGTATAGGTGTAGGTCTCTCCTGGTTGAATGCCATGTGTCTGGTTCCCTCCCTCAGGATAATTGGCTCCTTCTGCTGCTTTATCAATGGTCAGTCCATGAGGATAGATACTATATGGACGTGATGCTTTGTTTTTAAAGACAATCTTTATGACATCTCTGATTTGGGCTCTTATCACTGGCCCAAGAATCCCAAGCTCCTTCTTTCTCTGCTTGTCTTCCGCTCTCTCTTTAAATGTGTTATCTTTATACTGGGTAAACACAGCCTTTTTGTAACTTTTACCTATCCGTTGAGGCCCCTGCTTTAAATATTTTTTCCGGAAATCCACATCCATGTTTTCTGCCATATTTGGAGCATAATCCCAGATGACCTCTTCTGCTGCTATATAGTAAGTCCACTCTTGGCTTTCTTGTTTCTCTTGGATAGTAAGTCGTCTTTTTGGTGCTGTGTACTCATCACATGTCCTGATATTTAGGTATCCATGCAAGCCAGCTTCCAAGTGCCTGCTAATGTGAGAGGAAAAGAGCCAGCGTCCAGGGTGGATACCAGTCATACTGGCACTAGTGGCAGTTCCACTAATGATGCCAACAGTGGAGGTTTTGTGCCCATCATGCAGAAGGACTTGCCCATTGAAGTGTACAGAGAAGAGCTCTGGCTCAGAGCTCATTCCTAGCAGGTGCCAGCTGACTTTGGAGTGGGCACAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59800 True 3283 lncRNA 0.39 9 3150263 3156146

Neighbor

gene id symbol gene type direction distance location
CI01000009_03140599_03143635 SLC35A5 coding downstream 6628 3140599 ~ 3143635 (-)
CI01000009_03009238_03025860 NA coding downstream 124326 3008360 ~ 3025937 (-)
CI01000009_03006152_03007243 NA coding downstream 142408 3005386 ~ 3007855 (-)
CI01000009_02975388_02982670 NA coding downstream 164872 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 232713 2915641 ~ 2917550 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 15294 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 69622 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 78868 3235014 ~ 3242103 (-)
CI01000009_03244366_03259106 ILDR2 coding upstream 87452 3243598 ~ 3259106 (-)
CI01000009_03261739_03262843 NA coding upstream 104892 3261038 ~ 3262843 (-)
G52589 NA non-coding downstream 831 3147928 ~ 3149432 (-)
G52518 NA non-coding downstream 67826 3081991 ~ 3082437 (-)
G52566 NA non-coding downstream 78875 3071161 ~ 3071388 (-)
G52557 NA non-coding downstream 100610 3049098 ~ 3049653 (-)
G52556 NA non-coding downstream 104166 3045889 ~ 3046097 (-)
G52496 NA non-coding upstream 46619 3202765 ~ 3207426 (-)
G52521 NA non-coding upstream 64586 3220732 ~ 3221942 (-)
G52593 NA non-coding upstream 66486 3222632 ~ 3222961 (-)
G52592 NA non-coding upstream 67344 3223490 ~ 3223799 (-)
G52513 NA non-coding upstream 122598 3278744 ~ 3279333 (-)
CI01000009_02885473_02893975 NA other downstream 250856 2883688 ~ 2893975 (-)
G52410 NA other downstream 587730 2551724 ~ 2562533 (-)
G52098 NA other downstream 1742636 1401932 ~ 1407627 (-)
G52828 NA other upstream 1061274 4217420 ~ 4231469 (-)
G53515 NA other upstream 2346249 5502395 ~ 5505248 (-)
G55814 NA other upstream 5269675 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5702006 8856310 ~ 8860563 (-)

Expression


Co-expression Network